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[182636_at]

Description K07B1.4 /REP_DB=WormBase Gene ID /WP=CE27391 /TR=O01881 /GB=AAK71373.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 45      6grp_total > 81      4grp_total > 16      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1202
1 2 3 4 range
A 329.3
(-3)
P 		419.3
(-2.5)
P 		617.5
(-1.2)
P 		1313.2
(3)
P 		984
B 319.2
(-3)
P 		644.6
(-1.4)
P 		651.3
(-1.3)
P 		1521.1
(3)
P 		1202
C 428.2
(-3)
P 		604.7
(-1.7)
P 		663.7
(-1.3)
P 		1253.1
(3)
P 		825
avr 358.9
(-3) 		556.2
(-1.8) 		644.2
(-1.3) 		1362.5
(3) 		1004

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3212
1 2 3 4 5 6 range
A 528.8
(-3)
P 		939.3
(-2)
P 		1921.1
(0.4)
P 		3013.9
(3)
P 		2478.1
(1.7)
P 		1351.3
(-1)
P 		2485
B 644.3
(-3)
P 		1133.9
(-1.9)
P 		2035.9
(0)
P 		3408.1
(3)
P 		2925.3
(2)
P 		1690.1
(-0.7)
P 		2764
C 484.9
(-3)
P 		1011.2
(-2)
P 		1642.2
(-0.8)
P 		3696.6
(3)
P 		2259.3
(0.3)
P 		1822.7
(-0.5)
P 		3212
avr 552.7
(-3) 		1028.1
(-2) 		1866.4
(-0.2) 		3372.9
(3) 		2554.2
(1.3) 		1621.4
(-0.7) 		2820
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 119.9
(-1.3)
P 		91
(-3)
P 		161.4
(1.2)
P 		192.2
(3)
P 		101
B 101.8
(-3)
P 		159.2
(-1.5)
P 		150.9
(-1.7)
P 		324.2
(3)
P 		222
C 141.7
(-3)
P 		173.8
(-0.9)
P 		231.3
(3)
P 		211.3
(1.7)
P 		90
avr 121.1
(-3) 		141.3
(-2) 		181.2
(-0) 		242.6
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1091
1 2 3 4 5 6 range
A 97.5
(-3)
P 		334.1
(-0.9)
P 		418.4
(-0.1)
P 		764.4
(3)
P 		747.8
(2.9)
P 		329
(-0.9)
P 		667
B 224.2
(-3)
P 		377.4
(-2)
P 		494.4
(-1.3)
P 		902.7
(1.2)
P 		1188.5
(3)
P 		630.2
(-0.5)
P 		964
C 179.7
(-3)
P 		308.5
(-1.6)
P 		418
(-0.5)
P 		743.4
(3)
P 		731.1
(2.9)
P 		610.2
(1.6)
P 		564
avr 167.1
(-3) 		340
(-1.6) 		443.6
(-0.7) 		803.5
(2.3) 		889.1
(3) 		523.1
(-0) 		722
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12235
Sequence Type Exemplar sequence
Representative Public ID K07B1.4 NCBI
Target Description K07B1.4 /REP_DB=WormBase Gene ID /WP=CE27391 /TR=O01881 /GB=AAK71373.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073012(11), NM_182380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073012 NCBI Caenorhabditis elegans K07B1.4a (K07B1.4) mRNA, complete cds. 11/11 A 
NM_182380 NCBI Caenorhabditis elegans K07B1.4b (K07B1.4) mRNA, complete cds. 11/11 A 
SNAP00000012084 ENSEMBL cdna:SNAP chromosome:CEL140:V:9332834:9333899:1 11/11 None
GENEFINDER00000012096 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9332834:9333899:1 11/11 None
K07B1.4a ENSEMBL cdna:known chromosome:CEL140:V:9331554:9334105:1 gene:K07B1.4 11/11 A 
K07B1.4b ENSEMBL cdna:known chromosome:CEL140:V:9332834:9333899:1 gene:K07B1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9332833-9333899(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07B1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71373 Hypothetical protein K07B1.4a [Caenorhabditis elegans] ref|NP_505413.1| K07B1.4a [Caenorhabditis elegans] 0.0
blast AAO21379 Hypothetical protein K07B1.4b [Caenorhabditis elegans] ref|NP_872180.1| K07B1.4b [Caenorhabditis elegans] pir||T15251 hypothetical protein K07B1.4 - Caenorhabditis elegans 0.0
blast CAE72154 Hypothetical protein CBG19252 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007130 EMBL-EBI Diacylglycerol acyltransferase 1.0E-126
Pfam IPR007130 EMBL-EBI Diacylglycerol acyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505413.1 1 36-58
NP_872180.1 2 20-42,44-66
K07B1.4a 1 36-58
K07B1.4b 2 20-42,44-66
SNAP00000012084 2 20-42,44-66
GENEFINDER00000012096 2 20-42,44-66
Sequence
Target Sequence 
>C. ELEGANS:182636_AT
ttctcgatactcttccacgaattcgtttccatttgtgcacacttgttggtcaattctgga
ctccgtggagacgtgagtggggattgttgcacggaatgatagactgcagtcgagaaagca
tcaagcacgttttggagcatgaaaagaaaggaaaagcagttgtattggtggttggtggag
ctgaagaagcacttgatgcacatccaggatgccatattttgactttgaaaaaaaggaaag
gattcgtgaaaattgccctgcaaactggagctcaactggttccatgctattcattcggtg
aaaatgatattttcaatcaagccgaaaatccaaagggatcaacaattcgacagttccaaa
cgataatgaaaagagtcttgggattctcccctccagcattctatgggagaggagtattca
actatacatttggtcttcttccattcagaaaacctatcaacactgttctcggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGATACTCTTCCACGAATTCG 690 691 410 Antisense
AATTCGTTTCCATTTGTGCACACTT 634 177 429 Antisense
GTTGGTCAATTCTGGACTCCGTGGA 166 429 454 Antisense
GCACTTGATGCACATCCAGGATGCC 648 315 598 Antisense
GGATTCGTGAAAATTGCCCTGCAAA 570 507 649 Antisense
CCCTGCAAACTGGAGCTCAACTGGT 143 261 665 Antisense
ACTGGTTCCATGCTATTCATTCGGT 213 97 684 Antisense
GAAAAGAGTCTTGGGATTCTCCCCT 557 353 777 Antisense
TCTCCCCTCCAGCATTCTATGGGAG 274 611 794 Antisense
TCAACTATACATTTGGTCTTCTTCC 417 629 827 Antisense
AAACCTATCAACACTGTTCTCGGCG 85 127 859 Antisense
Sequence Source Affymetrix Proprietary Database