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[182635_at]

Description R01H10.7 /REP_DB=WormBase Gene ID /WP=CE20024 /TR=Q21623 /GB=CAA83465.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 63      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 128.6
(3)
A 		66.2
(-2)
A 		101.6
(0.8)
A 		54
(-3)
A 		75
B 133.4
(3)
A 		11.1
(-3)
A 		121.3
(2.4)
A 		84.4
(0.6)
A 		122
C 116.7
(3)
A 		74.2
(-2.7)
A 		101
(0.9)
P 		71.8
(-3)
A 		45
avr 126.2
(3) 		50.5
(-3) 		108
(1.6) 		70.1
(-1.4) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 47.7
(0.6)
A 		45.1
(0.4)
A 		11.2
(-2.8)
A 		9.1
(-3)
A 		14.1
(-2.5)
A 		72.6
(3)
A 		64
B 61.1
(0.8)
A 		41.7
(-0.6)
A 		8.7
(-3)
A 		48.5
(-0.1)
A 		44
(-0.4)
A 		90.5
(3)
A 		82
C 55.1
(1)
A 		48.9
(0.5)
A 		28.3
(-1.1)
A 		2.5
(-3)
A 		38.5
(-0.3)
A 		82.1
(3)
A 		80
avr 54.6
(0.5) 		45.2
(-0.3) 		16.1
(-3) 		20
(-2.6) 		32.2
(-1.5) 		81.7
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 46.8
(3)
A 		14.4
(-2)
A 		26.6
(-0.1)
A 		7.9
(-3)
A 		39
B 42.5
(3)
A 		2.7
(-3)
A 		28.1
(0.8)
A 		18
(-0.7)
A 		40
C 38.6
(3)
A 		21.3
(-0.9)
A 		35.2
(2.2)
P 		12.1
(-3)
A 		27
avr 42.6
(3) 		12.8
(-3) 		30
(0.5) 		12.7
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 8.8
(-0.5)
A 		16
(2.3)
A 		2.4
(-3)
A 		2.3
(-3)
A 		4.2
(-2.3)
A 		17.7
(3)
A 		15
B 21.3
(0.6)
A 		13.9
(-0.8)
A 		2.1
(-3)
A 		12.8
(-1)
A 		17.9
(-0)
A 		33.8
(3)
A 		32
C 20.4
(1.4)
A 		14.9
(0.2)
A 		7.2
(-1.5)
A 		0.5
(-3)
A 		12.5
(-0.3)
A 		27.5
(3)
A 		27
avr 16.8
(0.5) 		14.9
(-0.1) 		3.9
(-3) 		5.2
(-2.7) 		11.5
(-1) 		26.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7754
Sequence Type Exemplar sequence
Representative Public ID R01H10.7 NCBI
Target Description R01H10.7 /REP_DB=WormBase Gene ID /WP=CE20024 /TR=Q21623 /GB=CAA83465.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066872 NCBI Caenorhabditis elegans R01H10.7 (R01H10.7) mRNA, complete cds. 11/11 None
SNAP00000005994 ENSEMBL cdna:SNAP chromosome:CEL140:III:10262084:10266758:-1 11/11 None
GENEFINDER00000005998 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10262084:10265996:-1 11/11 None
R01H10.7 ENSEMBL cdna:known chromosome:CEL140:III:10261648:10267270:-1 gene:R01H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10262079-10267262(-) 98.4 99.84
Public Domain and Genome References
Gene Title
Ensembl R01H10.7
Entrez Gene 187517 Entrez gene
SwissProt Q21623 EMBL-EBI
WormBase CE20024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83465 Hypothetical protein R01H10.7 [Caenorhabditis elegans] ref|NP_499273.3| R01H10.7 [Caenorhabditis elegans] 0.0
blast AAM97343 inositol polyphosphate-4-phosphatase [Caenorhabditis elegans] 0.0
blast CAE56180 Hypothetical protein CBG23800 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182635_AT
gattccattgcctcatgactatttcgatgagcttccagatcatatcaaatggacatctga
attcacagtcactacgtcgtacttcaatttgggagtcaatcacgaggcgacattcggtca
atcgtttggtggagtgtcgtttgagagtatagtcaaccaagatgcagcggacaagctcaa
cgtattcgccaatcgcaacgaagcgagcccccgagcacgtgaagctgtgatggaggtggt
gaatgaagtgtcgagtgagccgtctcggaagaatctcaccatgttcgattgggctatgac
ggcgtgtgagcaacttggcggcgaggcggtgatctcttgcaagagcgggaaggatcggac
aggaatggcgtcgacattggagcaagggcgggtgctgagagagacttgtggattcaatac
ggctcaggtgtccgaagtggtttcatcattgcgaaaagaaggtgttcgacgtgagaattg
tcggaaaaacgtcggaaaacctgtctactcgttcagtccgttccaaatgcatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCATTGCCTCATGACTATTTC 539 433 1860 Antisense
ATTCACAGTCACTACGTCGTACTTC 375 9 1920 Antisense
GAGGCGACATTCGGTCAATCGTTTG 356 405 1963 Antisense
GACAAGCTCAACGTATTCGCCAATC 454 365 2029 Antisense
TGAGCCGTCTCGGAAGAATCTCACC 319 569 2115 Antisense
GAATCTCACCATGTTCGATTGGGCT 87 329 2130 Antisense
TGACGGCGTGTGAGCAACTTGGCGG 32 569 2156 Antisense
CGAGGCGGTGATCTCTTGCAAGAGC 503 249 2181 Antisense
GGCTCAGGTGTCCGAAGTGGTTTCA 240 537 2280 Antisense
GGAAAACCTGTCTACTCGTTCAGTC 293 527 2353 Antisense
GTTCAGTCCGTTCCAAATGCATTTC 436 443 2370 Antisense
Sequence Source Affymetrix Proprietary Database