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[182634_at]

Description F56C9.9 /REP_DB=WormBase Gene ID /WP=CE01328 /TR=Q20867 /GB=AAK18964.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 49.6
(-2.6)
A 		42.3
(-3)
A 		48.9
(-2.7)
A 		166.9
(3)
A 		125
B 56.2
(-0.8)
A 		35.3
(-2.6)
A 		31.2
(-3)
A 		98.7
(3)
A 		68
C 41
(1.1)
A 		26
(-1.4)
A 		16.3
(-3)
A 		52.5
(3)
A 		36
avr 48.9
(-1.6) 		34.5
(-2.8) 		32.1
(-3) 		106
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 20.5
(-2.4)
A 		6
(-3)
A 		65.8
(-0.3)
A 		63.1
(-0.5)
A 		66.9
(-0.3)
A 		140.7
(3)
P 		135
B 60.7
(1)
A 		50.3
(0.2)
A 		51.2
(0.2)
A 		80.5
(2.5)
M 		9.3
(-3)
A 		87.1
(3)
P 		78
C 56.9
(-0.7)
A 		110.2
(3)
A 		51.2
(-1.1)
A 		55.2
(-0.8)
A 		92.7
(1.8)
A 		24.1
(-3)
A 		86
avr 46
(-3) 		55.5
(-1.5) 		56.1
(-1.4) 		66.3
(0.2) 		56.3
(-1.4) 		84
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18
(0.5)
A 		9.2
(-3)
A 		12.8
(-1.6)
A 		24.4
(3)
A 		15
B 17.9
(1.7)
A 		8.7
(-2.3)
A 		7.2
(-3)
A 		21
(3)
A 		14
C 13.6
(3)
A 		7.5
(-1.6)
A 		5.7
(-3)
A 		8.9
(-0.6)
A 		8
avr 16.5
(2) 		8.5
(-3) 		8.6
(-2.9) 		18.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.8
(-2.7)
A 		2.1
(-3)
A 		14.3
(-0.7)
A 		16
(-0.4)
A 		20.2
(0.4)
A 		34.2
(3)
P 		32
B 21.1
(0.6)
A 		16.8
(-0.3)
A 		12.4
(-1.2)
A 		21.3
(0.7)
M 		3.8
(-3)
A 		32.5
(3)
P 		29
C 21.1
(0.1)
A 		33.6
(3)
A 		13
(-1.8)
A 		11.1
(-2.3)
A 		30
(2.2)
A 		8.1
(-3)
A 		26
avr 15.3
(-1.9) 		17.5
(-0.8) 		13.2
(-3) 		16.1
(-1.5) 		18
(-0.5) 		24.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7755
Sequence Type Exemplar sequence
Representative Public ID F56C9.9 NCBI
Target Description F56C9.9 /REP_DB=WormBase Gene ID /WP=CE01328 /TR=Q20867 /GB=AAK18964.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171189
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032855 ENSEMBL cdna:SNAP chromosome:CEL140:III:7325041:7326059:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171189 4/11 Cross Hyb Matching Probes None
GENEFINDER00000032861 4/11 Cross Hyb Matching Probes None
F56C9.11 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7325038-7326048(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16473 hypothetical protein F56C9.9 - Caenorhabditis elegans 5.0E-77
blast AAL50325 Hypothetical protein F56C9.11 [Caenorhabditis elegans] ref|NP_741221.1| F56C9.11 [Caenorhabditis elegans] 8.0E-27
Sequence
Target Sequence 
>C. ELEGANS:182634_AT
attcaacccctgatgcgagtctaggaccgagcagagattgggtgttccatgtgccaaggt
ggaattcgctcttctttaattccgatctggtggtctttcgtagttggcccccggcagtcc
tcaagggcgaagaccgtggccctagtgaacttgattgccgggttgtagatccatcgtcct
tgtccgagcaagcacgtaataccatcaatcgtcttatcctcatggaaccgaacacacaga
aacgtggaatttctgatgaaacagtgtcaaatgcgtctccgccagagaaatctccacgcc
ttgtgaattcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAACCCCTGATGCGAGTCTAGG 577 9 71 Antisense
TGCCAAGGTGGAATTCGCTCTTCTT 16 587 122 Antisense
GCTCTTCTTTAATTCCGATCTGGTG 249 301 138 Antisense
ATCTGGTGGTCTTTCGTAGTTGGCC 443 33 155 Antisense
CCCGGCAGTCCTCAAGGGCGAAGAC 225 253 180 Antisense
ATTGCCGGGTTGTAGATCCATCGTC 292 7 224 Antisense
TCGTCCTTGTCCGAGCAAGCACGTA 446 605 244 Antisense
ATCAATCGTCTTATCCTCATGGAAC 228 27 274 Antisense
GAAACAGTGTCAAATGCGTCTCCGC 704 355 328 Antisense
CGTCTCCGCCAGAGAAATCTCCACG 377 245 344 Antisense
AATCTCCACGCCTTGTGAATTCACC 684 169 359 Antisense
Sequence Source Affymetrix Proprietary Database