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[182633_at]

Description C06E4.7 /REP_DB=WormBase Gene ID /WP=CE03955 /TR=Q17727 /GB=AAA82476.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      6grp_total > 38      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 515
1 2 3 4 range
A 231.8
(-1.2)
P 		118.8
(-2.5)
P 		80.2
(-3)
A 		580.4
(3)
P 		500
B 260.3
(-0.7)
P 		113.1
(-2.6)
P 		82.8
(-3)
A 		543
(3)
P 		460
C 246.3
(-1.1)
P 		141.7
(-2.3)
A 		82.8
(-3)
A 		595.4
(3)
P 		513
avr 246.1
(-1) 		124.5
(-2.5) 		81.9
(-3) 		572.9
(3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 254.5
(3)
P 		123.3
(-2.8)
P 		151.4
(-1.5)
P 		122.3
(-2.8)
P 		118.2
(-3)
P 		214.7
(1.2)
P 		136
B 268.8
(3)
P 		165.6
(0.2)
P 		96.8
(-1.7)
P 		48.8
(-3)
P 		121.1
(-1)
P 		239.2
(2.2)
P 		220
C 239
(2.3)
P 		261.7
(3)
P 		63.4
(-3)
P 		96.4
(-2)
A 		94.1
(-2.1)
P 		211.7
(1.5)
P 		198
avr 254.1
(3) 		183.5
(0.4) 		103.9
(-2.5) 		89.2
(-3) 		111.1
(-2.2) 		221.9
(1.8) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 84.4
(2.9)
P 		25.8
(-2.6)
P 		21
(-3)
A 		85
(3)
P 		64
B 83
(1)
P 		27.9
(-2.5)
P 		19.2
(-3)
A 		115.7
(3)
P 		97
C 81.5
(1.4)
P 		40.7
(-2)
A 		28.9
(-3)
A 		100.4
(3)
P 		72
avr 83
(1.7) 		31.5
(-2.3) 		23
(-3) 		100.4
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 46.9
(1.5)
P 		43.9
(0.6)
P 		33
(-2.4)
P 		31
(-3)
P 		35.7
(-1.7)
P 		52.3
(3)
P 		21
B 93.5
(3)
P 		55.1
(0.1)
P 		23.5
(-2.2)
P 		12.9
(-3)
P 		49.2
(-0.3)
P 		89.2
(2.7)
P 		81
C 88.6
(3)
P 		79.9
(2.3)
P 		16.1
(-3)
P 		19.4
(-2.7)
A 		30.4
(-1.8)
P 		70.9
(1.5)
P 		73
avr 76.3
(3) 		59.6
(1.2) 		24.2
(-2.7) 		21.1
(-3) 		38.4
(-1.1) 		70.8
(2.4) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9814
Sequence Type Exemplar sequence
Representative Public ID C06E4.7 NCBI
Target Description C06E4.7 /REP_DB=WormBase Gene ID /WP=CE03955 /TR=Q17727 /GB=AAA82476.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068756 NCBI Caenorhabditis elegans C06E4.7 (C06E4.7) mRNA, complete cds. 11/11 None
SNAP00000041907 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7262221:7263220:-1 11/11 None
GENEFINDER00000041918 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7262221:7263220:-1 11/11 None
C06E4.7 ENSEMBL cdna:known chromosome:CEL140:IV:7262221:7263220:-1 gene:C06E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7262226-7263226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E4.7
Entrez Gene 182330 Entrez gene
SwissProt Q17727 EMBL-EBI
WormBase CE34658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82476 Hypothetical protein C06E4.7 [Caenorhabditis elegans] ref|NP_501157.2| C06E4.7 [Caenorhabditis elegans] 1.0E-131
blast AAA82476 Hypothetical protein C06E4.7 [Caenorhabditis elegans] ref|NP_501157.2| C06E4.7 [Caenorhabditis elegans] 1.0E-128
blast CAE61849 Hypothetical protein CBG05824 [Caenorhabditis briggsae] 1.0E-123
blast CAE61849 Hypothetical protein CBG05824 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:182633_AT
tgaaccttccatttcgtgaatccagcagacaagcttcaccatctccagattcaccatcag
ttggaccacggacaataaatctaagtgttgcagagagacagtgtatttgtgccagctggg
aaaaagcttcaactcaatcggatattggatgtgaacttgtagccagacttctcaatgaca
acagaactcgcttccgtgcgcttttagaatgtaaatccggaagcttcttgggttccggga
attacacaacagaggacgtaaatggaatgaaaagagcacgaagtgtggcagatggggtca
actgttttttcaataaggtagggacgtatgtcatctgtggaggattgaagaaggttcaga
cagtcgagaagcacacaactcatgcgtggttcaagtttgtgcagtttataattcagaaca
tgaagaaaggatttctagctgaagcactcaactccgactcccacaacgagccaaaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCTTCCATTTCGTGAATCCAG 357 571 14 Antisense
AATCCAGCAGACAAGCTTCACCATC 616 167 32 Antisense
GATTCACCATCAGTTGGACCACGGA 400 431 61 Antisense
GACAGTGTATTTGTGCCAGCTGGGA 91 369 110 Antisense
GAACTTGTAGCCAGACTTCTCAATG 163 349 166 Antisense
AATGACAACAGAACTCGCTTCCGTG 460 165 187 Antisense
CGCTTCCGTGCGCTTTTAGAATGTA 289 255 202 Antisense
GGGACGTATGTCATCTGTGGAGGAT 279 495 334 Antisense
GAAGCACACAACTCATGCGTGGTTC 521 341 381 Antisense
TTCTAGCTGAAGCACTCAACTCCGA 531 691 446 Antisense
GACTCCCACAACGAGCCAAAAACTG 383 375 469 Antisense
Sequence Source Affymetrix Proprietary Database