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[182632_at] 7TM chemoreceptor, srt family

Description R03H4.4 /REP_DB=WormBase Gene ID /WP=CE07407 /TR=Q21686 /GB=AAC48103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 09      6grp_cgc > 96      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 1.2
(-3)
A 		4
(-2.8)
A 		26.6
(-1.1)
A 		80.9
(3)
A 		80
B 31.9
(-3)
A 		41.2
(-1)
A 		60.3
(3)
A 		50.5
(0.9)
M 		28
C 7
(-3)
A 		22.6
(-2.2)
A 		11
(-2.8)
A 		118.5
(3)
P 		112
avr 13.4
(-3) 		22.6
(-2.2) 		32.6
(-1.4) 		83.3
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13
(-0.1)
A 		2.8
(-3)
A 		23.6
(3)
A 		19.2
(1.7)
A 		23.2
(2.9)
A 		8.8
(-1.3)
A 		21
B 20.9
(1.1)
A 		11.2
(-0.9)
A 		1
(-3)
A 		2.1
(-2.8)
A 		30.3
(3)
A 		10.3
(-1.1)
A 		29
C 14.8
(-0.8)
A 		22.2
(0.4)
A 		1.1
(-3)
A 		38.6
(3)
A 		3.1
(-2.7)
A 		21.6
(0.3)
A 		38
avr 16.2
(1) 		12.1
(-1.2) 		8.6
(-3) 		20
(3) 		18.9
(2.4) 		13.6
(-0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.4
(-3)
A 		0.9
(-2.7)
A 		7
(0.5)
A 		11.8
(3)
A 		11
B 10.2
(-3)
A 		10.2
(-3)
A 		14
(3)
A 		10.8
(-2.1)
M 		4
C 2.3
(-3)
A 		6.5
(-1.6)
A 		3.8
(-2.5)
A 		20
(3)
P 		18
avr 4.3
(-3) 		5.9
(-2) 		8.3
(-0.6) 		14.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.4
(-1.6)
A 		1
(-3)
A 		5.2
(1.2)
A 		4.9
(0.9)
A 		7
(3)
A 		2.1
(-1.9)
A 		6
B 7.3
(0.5)
A 		3.7
(-1.3)
A 		0.2
(-3)
A 		0.6
(-2.8)
A 		12.3
(3)
A 		3.8
(-1.2)
A 		12
C 5.5
(1.2)
A 		6.8
(2.2)
A 		0.3
(-3)
A 		7.8
(3)
A 		1
(-2.4)
A 		7.2
(2.5)
A 		8
avr 5.1
(0.9) 		3.8
(-0.7) 		1.9
(-3) 		4.4
(0.1) 		6.8
(3) 		4.4
(0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11432
Sequence Type Exemplar sequence
Representative Public ID R03H4.4 NCBI
Target Description R03H4.4 /REP_DB=WormBase Gene ID /WP=CE07407 /TR=Q21686 /GB=AAC48103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072931 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-18) (srt-18) mRNA, complete cds. 11/11 None
R03H4.4 ENSEMBL cdna:known chromosome:CEL140:V:9016995:9018227:-1 gene:R03H4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9016995-9017916(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-18
Ensembl R03H4.4
Entrez Gene 187550 Entrez gene
SwissProt Q21686 EMBL-EBI
WormBase CE37925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505332 Serpentine Receptor, class T family member (srt-18) [Caenorhabditis elegans] gb|AAC48103.2| Serpentine receptor, class t protein 18 [Caenorhabditis elegans] 0.0
blast NP_503835 Serpentine Receptor, class T family member (srt-16) [Caenorhabditis elegans] gb|AAG23998.3| Serpentine receptor, class t protein 16 [Caenorhabditis elegans] 9.0E-98
blast NP_503834 Serpentine Receptor, class T family member (srt-15) [Caenorhabditis elegans] gb|AAG23997.2| Serpentine receptor, class t protein 15 [Caenorhabditis elegans] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.4E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505332.2 7 55-77,90-112,127-149,170-192,215-237,257-279,289-311
R03H4.4 7 55-77,90-112,127-149,170-192,215-237,257-279,289-311
Sequence
Target Sequence 
>C. ELEGANS:182632_AT
attggcattcattcgagtttgcgatttagacaatctgaatgacaccaaaaaatgtttcga
aggttggaaaatatttgtgattttaggaatattttgtgtttatgttatttatccgatgct
cttcacaaaacctattattttcaatctgacccatatgtcatggttttttgatccgggagt
tggaaaagatccaaacctttacgttaatatttaccacattttcaacaacatgatggtatc
aatatgtacagttctcttttatggatatctagtatggatttatttgaaaaaatctacaca
aagttcaacaaaaaaattaacaaaaatgcaagcaacggttctacttcaagcttttttatt
ttgcttctttcatgcaacaagttccgttgtttatgtctatatgaactttttcgagatttc
cgaattattaattgtcattgggcattttttctggcaattgagcagtggaacggtttgcat
tatttacttaacactaaacaagtccataagacaagaagtgcggaatctgatttgccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCATTCATTCGAGTTTGCGAT 384 3 177 Antisense
GTTATTTATCCGATGCTCTTCACAA 585 447 280 Antisense
AACCTATTATTTTCAATCTGACCCA 256 147 305 Antisense
ATATTTACCACATTTTCAACAACAT 661 19 383 Antisense
GTACAGTTCTCTTTTATGGATATCT 53 461 422 Antisense
GCAACGGTTCTACTTCAAGCTTTTT 493 319 508 Antisense
GCTTCTTTCATGCAACAAGTTCCGT 611 305 539 Antisense
CAAGTTCCGTTGTTTATGTCTATAT 157 185 554 Antisense
TGTCATTGGGCATTTTTTCTGGCAA 647 557 609 Antisense
GTGGAACGGTTTGCATTATTTACTT 518 489 641 Antisense
GAAGTGCGGAATCTGATTTGCCGAA 212 335 691 Antisense
Sequence Source Affymetrix Proprietary Database