[Home] | [Total List]

[182631_at]

Description F39G3.2 /REP_DB=WormBase Gene ID /WP=CE10114 /TR=O16275 /GB=AAB65328.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 14.3
(-2.1)
A 		30.5
(-0.6)
A 		4.7
(-3)
A 		68.9
(3)
A 		64
B 27.1
(3)
A 		2.2
(-3)
A 		27.3
(3)
A 		21
(1.5)
A 		25
C 35.5
(-0.2)
A 		2.8
(-3)
A 		5.9
(-2.7)
A 		72.3
(3)
P 		70
avr 25.6
(-1) 		11.8
(-3) 		12.6
(-2.9) 		54.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 35
(-0)
A 		5.8
(-3)
A 		44
(0.9)
A 		38.9
(0.3)
A 		65.1
(3)
P 		39.4
(0.4)
A 		59
B 40.4
(-1.5)
A 		40.4
(-1.5)
A 		32.2
(-3)
A 		36.5
(-2.2)
A 		65.7
(3)
A 		36.8
(-2.2)
A 		34
C 24.5
(-1.8)
A 		43.4
(1.8)
A 		34
(0)
A 		49.9
(3)
A 		18.1
(-3)
A 		42.8
(1.7)
P 		32
avr 33.3
(-2) 		29.9
(-3) 		36.7
(-0.9) 		41.8
(0.6) 		49.6
(3) 		39.7
(-0) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.2
(-0.3)
A 		6.6
(0.6)
A 		1.2
(-3)
A 		10.1
(3)
A 		9
B 8.6
(3)
A 		0.5
(-3)
A 		6.3
(1.3)
A 		4.5
(-0)
A 		8
C 11.8
(2.8)
A 		0.8
(-3)
A 		2.1
(-2.3)
A 		12.2
(3)
P 		11
avr 8.5
(2.6) 		2.6
(-3) 		3.2
(-2.4) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.5
(-1.5)
A 		2
(-3)
A 		9.6
(-0.4)
A 		9.9
(-0.3)
A 		19.6
(3)
P 		9.6
(-0.4)
A 		18
B 14
(-1)
A 		13.4
(-1.2)
A 		7.8
(-3)
A 		9.7
(-2.4)
A 		26.7
(3)
A 		13.7
(-1.1)
A 		19
C 9.1
(-0.7)
A 		13.2
(2.2)
A 		8.7
(-1)
A 		10
(-0.1)
A 		5.9
(-3)
A 		14.3
(3)
P 		8
avr 9.9
(-2.2) 		9.5
(-2.4) 		8.7
(-3) 		9.9
(-2.2) 		17.4
(3) 		12.5
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14997
Sequence Type Exemplar sequence
Representative Public ID F39G3.2 NCBI
Target Description F39G3.2 /REP_DB=WormBase Gene ID /WP=CE10114 /TR=O16275 /GB=AAB65328.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071872(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071872 NCBI Caenorhabditis elegans F39G3.2 (F39G3.2) mRNA, complete cds. 10/11 None
SNAP00000029882 ENSEMBL cdna:SNAP chromosome:CEL140:V:4737975:4740951:1 11/11 None
F39G3.2 ENSEMBL cdna:known chromosome:CEL140:V:4737659:4740951:1 gene:F39G3.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4737658-4740951(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39G3.2
Entrez Gene 185501 Entrez gene
SwissProt O16275 EMBL-EBI
WormBase CE35304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65328 Hypothetical protein F39G3.2 [Caenorhabditis elegans] ref|NP_504273.2| F39G3.2 [Caenorhabditis elegans] 0.0
blast CAE64181 Hypothetical protein CBG08807 [Caenorhabditis briggsae] 0.0
blast CAE64181 Hypothetical protein CBG08807 [Caenorhabditis briggsae] 1.0E-165
blast CAB04027 Hypothetical protein E03H4.5 [Caenorhabditis elegans] ref|NP_493148.1| E03H4.5 [Caenorhabditis elegans] 3.0E-94
blast AAC17759 Hypothetical protein C18G1.7 [Caenorhabditis elegans] ref|NP_504275.1| C18G1.7 [Caenorhabditis elegans] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-119
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.7E-109
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504273.2 1 7-25
F39G3.2 1 7-25
Sequence
Target Sequence 
>C. ELEGANS:182631_AT
aacgatggattttcacggtgtggtcaagcctgtatttttggacagaaatggacctccaaa
gacaattttcaacagctccgcagtagacattattgttacacattcgattcgacgatttat
tggaaatgaaactacaattcgggtagctcatttttccccattttttcttcttaattcttt
ccctcttcaggccaacggatctcttcttcactatcgtcacaatagctacacagatcctgc
aaaggaagtccagaagccttacagtctattcacttcttacccaaacctgcacatcaaacg
aatccaaaagacacttcgaaaagtgttcggctcatcgataccaccttacaactcaacata
cctacacgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGATGGATTTTCACGGTGTGGTC 646 143 966 Antisense
ACGGTGTGGTCAAGCCTGTATTTTT 297 93 980 Antisense
AAGACAATTTTCAACAGCTCCGCAG 435 153 1024 Antisense
AACAGCTCCGCAGTAGACATTATTG 55 137 1036 Antisense
TATTGTTACACATTCGATTCGACGA 428 663 1056 Antisense
TACAATTCGGGTAGCTCATTTTTCC 506 639 1098 Antisense
CTCTTCTTCACTATCGTCACAATAG 129 231 1166 Antisense
GTCACAATAGCTACACAGATCCTGC 382 465 1181 Antisense
TTACAGTCTATTCACTTCTTACCCA 677 683 1224 Antisense
TCATCGATACCACCTTACAACTCAA 434 621 1297 Antisense
ACAACTCAACATACCTACACGTTTT 150 113 1313 Antisense
Sequence Source Affymetrix Proprietary Database