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[182630_at]

Description F52D10.2 /REP_DB=WormBase Gene ID /WP=CE03388 /TR=Q20652 /GB=CAA91471.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 27      6grp_total > 19      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 232.8
(3)
P 		171.4
(-3)
A 		192.5
(-0.9)
P 		220.3
(1.8)
P 		61
B 257.8
(3)
P 		234.4
(1.4)
A 		170.1
(-3)
P 		237.8
(1.6)
P 		88
C 211.2
(0.7)
P 		258.8
(3)
P 		135.2
(-3)
P 		200.6
(0.2)
P 		124
avr 233.9
(3) 		221.5
(1.9) 		165.9
(-3) 		219.6
(1.7) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 386
(3)
P 		287.2
(-0.4)
P 		221
(-2.7)
P 		280.1
(-0.7)
P 		358
(2)
P 		212.8
(-3)
P 		173
B 365.5
(3)
P 		302.2
(0.5)
P 		284.4
(-0.1)
P 		307.3
(0.7)
P 		331
(1.7)
P 		210.5
(-3)
P 		155
C 338.2
(3)
P 		283
(0.5)
P 		241.4
(-1.3)
A 		321.6
(2.3)
M 		284.4
(0.6)
P 		203.8
(-3)
P 		134
avr 363.2
(3) 		290.8
(0.2) 		248.9
(-1.4) 		303
(0.7) 		324.5
(1.5) 		209
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 84.8
(3)
P 		37.2
(-2.4)
A 		50.3
(-0.9)
P 		32.2
(-3)
P 		53
B 82.2
(3)
P 		57.9
(-0.4)
A 		39.4
(-3)
P 		50.7
(-1.4)
P 		43
C 69.9
(2.3)
P 		74.4
(3)
P 		47.1
(-1)
P 		33.8
(-3)
P 		41
avr 79
(3) 		56.5
(-0.4) 		45.6
(-2) 		38.9
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 71.2
(-0.7)
P 		102.1
(2.4)
P 		48.1
(-3)
P 		71
(-0.7)
P 		108
(3)
P 		51.8
(-2.6)
P 		60
B 127.2
(2.3)
P 		100.6
(-0.1)
P 		69.1
(-3)
P 		81.4
(-1.9)
P 		134.5
(3)
P 		78.5
(-2.1)
P 		65
C 125.4
(3)
P 		86.3
(-0.7)
P 		61.4
(-3)
A 		64.7
(-2.7)
M 		92
(-0.1)
P 		68.2
(-2.4)
P 		64
avr 107.9
(2.6) 		96.3
(1.2) 		59.5
(-3) 		72.4
(-1.5) 		111.5
(3) 		66.2
(-2.2) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16461
Sequence Type Exemplar sequence
Representative Public ID F52D10.2 NCBI
Target Description F52D10.2 /REP_DB=WormBase Gene ID /WP=CE03388 /TR=Q20652 /GB=CAA91471.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077536 NCBI Caenorhabditis elegans F52D10.2 (F52D10.2) mRNA, complete cds. 11/11 None
SNAP00000034607 ENSEMBL cdna:SNAP chromosome:CEL140:X:11590213:11591635:-1 11/11 None
GENEFINDER00000034615 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11590213:11591635:-1 11/11 None
F52D10.2 ENSEMBL cdna:known chromosome:CEL140:X:11589671:11591640:-1 gene:F52D10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11590212-11591635(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52D10.2
Entrez Gene 181347 Entrez gene
SwissProt Q20652 EMBL-EBI
WormBase CE03388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91471 Hypothetical protein F52D10.2 [Caenorhabditis elegans] ref|NP_509937.1| F52D10.2 [Caenorhabditis elegans] 1.0E-163
blast CAE70610 Hypothetical protein CBG17293 [Caenorhabditis briggsae] 1.0E-157
blast XP_391828 PREDICTED: similar to CG8312-PA, isoform A [Apis mellifera] 6.0E-50
Sequence
Target Sequence 
>C. ELEGANS:182630_AT
gaacttcggtgtcatgcggttttgtgcaagaagagtgccgaaccgggaattatcaacacg
cgtcttcagaacttcttgcatgctgcacttcaggagtacaagcgtgagaaactctctgct
cagaatgctcgtctcaccggatcagccgggtgtcctcgtcgcaagctcattttgcagact
ggaaccctcaatttccgtccgcctgttagccgatcaaagtcagcgcctcgtctgggcagt
attgacgaagaacaagaagaagatgaagagcaatttggttctgacgacaatgagtcagtg
tgctaccgtgctgctccagatgtcgactccaactcatcgttcccagttagtgacacttac
aagtctgatgccggaccaagcagttcatcgactaccggtgcaagttctgtgtgctccgat
gatgacaggacaactctgcggctccctgtgacggatccagacagcctctctgaagaaagc
ggataccacgaggaaggcaagctggctcgcgaatctagtgaagaaatctatgcgtccgac
aacgatctggttatcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCGGTGTCATGCGGTTTTGT 29 351 394 Antisense
CAACACGCGTCTTCAGAACTTCTTG 281 189 447 Antisense
AACTCTCTGCTCAGAATGCTCGTCT 284 141 503 Antisense
CAGACTGGAACCCTCAATTTCCGTC 152 203 568 Antisense
TCCGCCTGTTAGCCGATCAAAGTCA 686 595 591 Antisense
CAATGAGTCAGTGTGCTACCGTGCT 319 183 681 Antisense
CAGATGTCGACTCCAACTCATCGTT 514 205 710 Antisense
ATGCCGGACCAAGCAGTTCATCGAC 324 41 761 Antisense
GTTCATCGACTACCGGTGCAAGTTC 416 443 776 Antisense
AAGCTGGCTCGCGAATCTAGTGAAG 561 149 892 Antisense
GTCCGACAACGATCTGGTTATCCTC 604 475 927 Antisense
Sequence Source Affymetrix Proprietary Database