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[182629_at]

Description C50D2.1 /REP_DB=WormBase Gene ID /WP=CE27874 /TR=O44799 /GB=AAB94949.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      6grp_highest_nonorm > 71      6grp_total > 03      4grp_total > 57      6grp_highest_sub > De      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 120.2
(-3)
A 		488.7
(3)
P 		478.1
(2.8)
P 		127.3
(-2.9)
A 		369
B 151.1
(-1.8)
A 		425.6
(1.9)
P 		507.8
(3)
P 		58.7
(-3)
A 		449
C 137
(-2.4)
A 		536.8
(1.4)
P 		707.4
(3)
P 		67.8
(-3)
A 		640
avr 136.1
(-2.4) 		483.7
(2) 		564.4
(3) 		84.6
(-3) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 406
1 2 3 4 5 6 range
A 457.3
(1.6)
P 		548.5
(3)
P 		234
(-2)
P 		373.2
(0.2)
P 		383.7
(0.4)
P 		168.8
(-3)
P 		380
B 408.2
(2.1)
P 		450
(3)
P 		227.4
(-1.9)
P 		331.2
(0.4)
P 		295
(-0.4)
P 		179
(-3)
P 		271
C 255.8
(-1.2)
P 		408.2
(1.3)
P 		513
(3)
P 		370
(0.7)
P 		312.7
(-0.2)
P 		142.9
(-3)
P 		370
avr 373.8
(1.1) 		468.9
(3) 		324.8
(0.2) 		358.1
(0.8) 		330.5
(0.3) 		163.6
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 43.8
(-1.6)
A 		106.1
(1.9)
P 		125
(3)
P 		18.6
(-3)
A 		106
B 48.2
(-1)
A 		105.1
(2.3)
P 		117.7
(3)
P 		12.5
(-3)
A 		105
C 45.3
(-2.1)
A 		154.3
(0.6)
P 		246.6
(3)
P 		11.4
(-3)
A 		235
avr 45.8
(-1.7) 		121.8
(1.3) 		163.1
(3) 		14.2
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 84.3
(-1.3)
P 		195.1
(3)
P 		51
(-2.6)
P 		94.6
(-0.9)
P 		115.8
(-0.1)
P 		41.1
(-3)
P 		154
B 142
(2.5)
P 		149.8
(3)
P 		55.2
(-3)
P 		87.7
(-0.9)
P 		119.9
(1.1)
P 		66.8
(-2.3)
P 		95
C 94.8
(0.4)
P 		124.5
(2.6)
P 		130.6
(3)
P 		74.4
(-1.1)
P 		101.2
(0.9)
P 		47.8
(-3)
P 		83
avr 107
(0.2) 		156.5
(3) 		78.9
(-1.5) 		85.6
(-1.1) 		112.3
(0.5) 		51.9
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5783
Sequence Type Exemplar sequence
Representative Public ID C50D2.1 NCBI
Target Description C50D2.1 /REP_DB=WormBase Gene ID /WP=CE27874 /TR=O44799 /GB=AAB94949.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061262 NCBI Caenorhabditis elegans C50D2.1 (C50D2.1) mRNA, complete cds. 11/11 None
C50D2.1 ENSEMBL cdna:known chromosome:CEL140:II:111668:114454:1 gene:C50D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:112557-114374(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50D2.1
Entrez Gene 173396 Entrez gene
SwissProt O44799 EMBL-EBI
WormBase CE27874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493663 C50D2.1 [Caenorhabditis elegans] gb|AAB94949.2| Hypothetical protein C50D2.1 [Caenorhabditis elegans] 0.0
blast CAE62807 Hypothetical protein CBG06983 [Caenorhabditis briggsae] 0.0
blast CAE67563 Hypothetical protein CBG13090 [Caenorhabditis briggsae] 5.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493663.1 1 7-29
C50D2.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182629_AT
aattgccaattctttctcttctggagttggtcttacgtactacgactggaatgtcaacgg
aatcccgtactaccctgtaaacgaggaaggttccattggaaacggccatcatggaaaagt
agattttggaacgtggggaggaggatattctgataatcttggtgtaagagatttctggtc
tcaaacccaagaatatggagctaactggtacgaaggccagtatggatacaaaactggatg
gagtattccaattgtgcagggaattggagttgaaggaggtcaaggaacgcaagtctcagt
gccaatcaaagaaggagagctcggaagaccgatttcagtgactaatgggtaccacgtcgg
gccatttatgggattagcagatagagttggagttgattggctcaacgggggagtctcgtg
gaataagggtttcgctgtcccattcgttggagttggtgtgaataccggaacagctgttgg
gttccctagtgtcggaatgataatgaacaggatgggtatggacggagtagaaactctgaa
taacatggcaagagcagcggctgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCCAATTCTTTCTCTTCTGGA 100 179 894 Antisense
GGAGTTGGTCTTACGTACTACGACT 632 517 916 Antisense
TGTCAACGGAATCCCGTACTACCCT 187 557 945 Antisense
GGTTCCATTGGAAACGGCCATCATG 540 499 982 Antisense
GGAACGCAAGTCTCAGTGCCAATCA 567 529 1177 Antisense
GTACCACGTCGGGCCATTTATGGGA 592 455 1242 Antisense
TGGCTCAACGGGGGAGTCTCGTGGA 51 545 1291 Antisense
GGAATAAGGGTTTCGCTGTCCCATT 451 525 1313 Antisense
CGCTGTCCCATTCGTTGGAGTTGGT 286 255 1326 Antisense
ACAGCTGTTGGGTTCCCTAGTGTCG 649 107 1363 Antisense
ACATGGCAAGAGCAGCGGCTGCCCA 288 107 1436 Antisense
Sequence Source Affymetrix Proprietary Database