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[182628_s_at]

Description T21F4.1 /REP_DB=WormBase Gene ID /WP=CE07525 /TR=Q22659 /GB=AAA98709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 12      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 60      6grp_total > 23      4grp_total > 04      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3737
1 2 3 4 range
A 1739.5
(-1.7)
P 		1050
(-2.8)
P 		909.4
(-3)
P 		4646.8
(3)
P 		3737
B 1823.4
(-1.7)
P 		1042.8
(-3)
P 		1132.1
(-2.8)
P 		4571.5
(3)
P 		3529
C 1667.1
(-1.8)
P 		980.5
(-3)
P 		1027.1
(-2.9)
P 		4477.8
(3)
P 		3497
avr 1743.3
(-1.8) 		1024.4
(-3) 		1022.9
(-3) 		4565.4
(3) 		3543

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 605.9
(3)
P 		490.8
(1.4)
P 		546.4
(2.2)
P 		395.6
(0.1)
P 		270.7
(-1.7)
P 		176.2
(-3)
P 		430
B 633.4
(3)
P 		492
(1)
P 		490.3
(1)
P 		360.1
(-0.8)
P 		228.4
(-2.7)
P 		206.9
(-3)
P 		427
C 523
(1.8)
P 		609.1
(3)
P 		423.1
(0.3)
P 		305.5
(-1.4)
P 		209.4
(-2.8)
P 		192.4
(-3)
P 		417
avr 587.4
(3) 		530.6
(2.1) 		486.6
(1.5) 		353.7
(-0.5) 		236.2
(-2.3) 		191.8
(-3) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 746
1 2 3 4 range
A 633.4
(2.4)
P 		227.9
(-3)
P 		237.7
(-2.9)
P 		680.2
(3)
P 		452
B 581.5
(-0.3)
P 		257.5
(-3)
P 		262.3
(-3)
P 		974.2
(3)
P 		717
C 551.9
(0.4)
P 		281.9
(-3)
P 		358
(-2)
P 		755
(3)
P 		473
avr 588.9
(0.7) 		255.8
(-3) 		286
(-2.7) 		803.1
(3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 111.7
(0.1)
P 		174.5
(3)
P 		119
(0.5)
P 		100.3
(-0.4)
P 		81.7
(-1.2)
P 		42.9
(-3)
P 		132
B 220.4
(3)
P 		163.8
(0.6)
P 		119.1
(-1.2)
P 		95.4
(-2.2)
P 		92.8
(-2.3)
P 		77.2
(-3)
P 		143
C 193.9
(3)
P 		185.9
(2.6)
P 		107.7
(-0.9)
P 		61.4
(-3)
P 		67.8
(-2.7)
P 		64.4
(-2.9)
P 		133
avr 175.3
(3) 		174.7
(3) 		115.3
(-0.2) 		85.7
(-1.7) 		80.8
(-2) 		61.5
(-3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182628_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16194
Sequence Type Exemplar sequence
Representative Public ID T21F4.1 NCBI
Target Description T21F4.1 /REP_DB=WormBase Gene ID /WP=CE07525 /TR=Q22659 /GB=AAA98709.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076547 NCBI Caenorhabditis elegans T21F4.1 (T21F4.1) mRNA, complete cds. 11/11 A 
SNAP00000010805 ENSEMBL cdna:SNAP chromosome:CEL140:X:5630317:5631725:1 11/11 None
GENEFINDER00000010807 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5630317:5632255:1 11/11 None
T21F4.1 ENSEMBL cdna:known chromosome:CEL140:X:5630314:5631778:1 gene:T21F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5630316-5632260(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21F4.1
Entrez Gene 180830 Entrez gene
SwissProt Q22659 EMBL-EBI
WormBase CE33700 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6527 arginine catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4053 arginase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98709 Hypothetical protein T21F4.1 [Caenorhabditis elegans] ref|NP_508948.2| T21F4.1 [Caenorhabditis elegans] 0.0
blast CAE68771 Hypothetical protein CBG14711 [Caenorhabditis briggsae] 0.0
blast AAA98709 Hypothetical protein T21F4.1 [Caenorhabditis elegans] ref|NP_508948.2| T21F4.1 [Caenorhabditis elegans] 1.0E-177
blast CAE68771 Hypothetical protein CBG14711 [Caenorhabditis briggsae] 1.0E-168
blast YP_343714 Arginase/agmatinase/formiminoglutamase [Nitrosococcus oceani ATCC 19707] gb|ABA58184.1| Arginase/agmatinase/formiminoglutamase [Nitrosococcus oceani ATCC 19707] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR006035 EMBL-EBI Arginase/agmatinase/formiminoglutamase 1.2E-40
Sequence
Target Sequence 
>C. ELEGANS:182628_S_AT
cggtctctcaatagacttggatggatttgatgtttcttacgcaccagctgttggaacacc
gtctgcagatggaatcaatgcattggagttcatcaaggctcttttgacaattgatttgac
aaagttgattgcgactgaaattgtggaattcctaccacgattcgatgacacccaaaggac
cagcgagcaacttgtgtccagtttggtggagtatatttacaagacaaagcaattccaaat
caactcggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTCTCTCAATAGACTTGGATGGA 81 245 684 Antisense
GATTTGATGTTTCTTACGCACCAGC 225 427 707 Antisense
GTTGGAACACCGTCTGCAGATGGAA 194 437 733 Antisense
GCATTGGAGTTCATCAAGGCTCTTT 422 307 763 Antisense
AAGGCTCTTTTGACAATTGATTTGA 605 161 778 Antisense
TTGTGGAATTCCTACCACGATTCGA 201 705 824 Antisense
TCCTACCACGATTCGATGACACCCA 460 591 833 Antisense
ATGACACCCAAAGGACCAGCGAGCA 328 45 848 Antisense
GACCAGCGAGCAACTTGTGTCCAGT 68 385 861 Antisense
GAGCAACTTGTGTCCAGTTTGGTGG 598 389 868 Antisense
AAAGCAATTCCAAATCAACTCGGTT 368 123 909 Antisense
Sequence Source Affymetrix Proprietary Database