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[182627_at]

Description F52G3.4 /REP_DB=WormBase Gene ID /WP=CE10860 /TR=Q9GZI1 /GB=AAF99972.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 52.7
(-3)
A 		125.3
(3)
A 		68.1
(-1.7)
A 		77.3
(-1)
A 		73
B 38.5
(-3)
A 		88.8
(3)
A 		68.8
(0.6)
A 		63
(-0.1)
P 		50
C 84
(2.8)
A 		75.3
(1.6)
P 		41.8
(-3)
A 		85.8
(3)
A 		44
avr 58.4
(-3) 		96.5
(3) 		59.6
(-2.8) 		75.4
(-0.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 111.8
(3)
A 		22.5
(-3)
A 		67.8
(0)
A 		36.9
(-2)
A 		57.5
(-0.6)
A 		26.3
(-2.7)
A 		89
B 67.3
(2.8)
A 		68.5
(3)
P 		56.2
(0.6)
A 		62.1
(1.7)
A 		37.9
(-3)
A 		38.9
(-2.8)
A 		31
C 52.7
(-0.7)
A 		39.4
(-3)
A 		57.6
(0.1)
A 		63.3
(1.1)
A 		74.7
(3)
A 		60.7
(0.6)
A 		35
avr 77.3
(3) 		43.5
(-2.7) 		60.5
(0.1) 		54.1
(-0.9) 		56.7
(-0.5) 		42
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.2
(-0)
A 		27.2
(3)
A 		17.8
(-0.5)
A 		11.3
(-3)
A 		16
B 12.3
(-3)
A 		21.9
(3)
A 		15.9
(-0.8)
A 		13.4
(-2.3)
P 		10
C 27.8
(3)
A 		21.7
(0.2)
P 		14.6
(-3)
A 		14.5
(-3)
A 		13
avr 19.8
(0.8) 		23.6
(3) 		16.1
(-1.3) 		13.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 20.6
(3)
A 		8
(-2.3)
A 		14.8
(0.5)
A 		9.3
(-1.8)
A 		17.3
(1.6)
A 		6.4
(-3)
A 		14
B 23.4
(3)
A 		22.8
(2.6)
P 		13.7
(-3)
A 		16.4
(-1.3)
A 		15.4
(-1.9)
A 		14.5
(-2.5)
A 		10
C 19.5
(0.7)
A 		12
(-3)
A 		14.7
(-1.7)
A 		12.7
(-2.7)
A 		24.2
(3)
A 		20.3
(1.1)
A 		12
avr 21.2
(3) 		14.3
(-1.9) 		14.4
(-1.9) 		12.8
(-3) 		19
(1.4) 		13.7
(-2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17370
Sequence Type Exemplar sequence
Representative Public ID F52G3.4 NCBI
Target Description F52G3.4 /REP_DB=WormBase Gene ID /WP=CE10860 /TR=Q9GZI1 /GB=AAF99972.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078342 NCBI Caenorhabditis elegans F52G3.4 (F52G3.4) mRNA, complete cds. 11/11 None
SNAP00000042479 ENSEMBL cdna:SNAP chromosome:CEL140:X:16948268:16952398:-1 10/11 None
F52G3.4 ENSEMBL cdna:known chromosome:CEL140:X:16948268:16952026:-1 gene:F52G3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042484 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16948267-16952026(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52G3.4
Entrez Gene 186130 Entrez gene
SwissProt Q9GZI1 EMBL-EBI
WormBase CE10860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99972 Hypothetical protein F52G3.4 [Caenorhabditis elegans] ref|NP_510743.1| F52G3.4 [Caenorhabditis elegans] 0.0
blast BAB01023.1 helicase-like protein [Arabidopsis thaliana] 1.0E-19
blast NP_189677 hypothetical protein [Arabidopsis thaliana] 1.0E-19
blast XP_472056 OSJNBb0066J23.21 [Oryza sativa (japonica cultivar-group)] emb|CAE04434.2| OSJNBa0018J19.1 [Oryza sativa (japonica cultivar-group)] emb|CAD40616.1| OSJNBb0066J23.21 [Oryza sativa (japonica cultivar-group)] 1.0E-19
blast BAB01023.1 helicase-like protein [Arabidopsis thaliana] 3.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510743.1 1 7-29
F52G3.4 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182627_AT
agcgccagttgattcttcatgcggttacaatggccaacgagatgggcaatccaaatttgt
tcatcactttcacgggaaatccggaatggaaagagatacaggagtacaccaaggagaaaa
attgcaaatggtatcatgctccagcatttgtcaatgccgtcttcaagacaaagttcgaga
agctccaggatgatgttattggagagaagactcgtgactggagtcgaaattctaagaagc
gaggaagagtgtacaggaagtctggaatctttgggaaagtgaagtggtacacttattcag
ttgagttccagcaaagaggaatgcctcatgtgcatatgttggtttgcttggaggaaccga
tcacgaatgcacatcaagtcgatctcatcaccactgctgaaatgcctccgattccagatc
catccgatcctgacttccactcgaaaatgcgtctacgaaaagctgttgagaagaagcatg
ttcacttcccatgcaaagatgctcctgactcatattgtaacgaagggaaaaagggacatt
ggacaagatgtggaaaggacttcccaaagccattcctggatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGCCAGTTGATTCTTCATGCGGT 166 83 2423 Antisense
TCATGCGGTTACAATGGCCAACGAG 405 619 2439 Antisense
AAATTTGTTCATCACTTTCACGGGA 313 115 2475 Antisense
GCAAATGGTATCATGCTCCAGCATT 647 317 2546 Antisense
CATTTGTCAATGCCGTCTTCAAGAC 388 215 2567 Antisense
GAGGAACCGATCACGAATGCACATC 373 405 2773 Antisense
TGCACATCAAGTCGATCTCATCACC 452 577 2790 Antisense
CTCATCACCACTGCTGAAATGCCTC 234 229 2806 Antisense
GTTCACTTCCCATGCAAAGATGCTC 517 445 2902 Antisense
GATGCTCCTGACTCATATTGTAACG 682 413 2920 Antisense
ACTTCCCAAAGCCATTCCTGGATGA 547 101 2981 Antisense
Sequence Source Affymetrix Proprietary Database