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[182624_at]

Description C08E3.3 /REP_DB=WormBase Gene ID /WP=CE08006 /TR=O17193 /GB=AAB70964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 24      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.5
(-3)
A 		3.9
(-1.7)
A 		9.2
(3)
A 		4.5
(-1.2)
A 		7
B 6
(-2.7)
A 		11.1
(-1.7)
A 		4.7
(-3)
A 		35.4
(3)
A 		31
C 12.6
(-0.9)
A 		11.2
(-1.2)
A 		27
(3)
A 		4.6
(-3)
A 		22
avr 7
(-3) 		8.7
(-1.7) 		13.6
(2.1) 		14.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7
(3)
A 		2.6
(-2.4)
A 		2.1
(-3)
A 		4.3
(-0.3)
A 		6
(1.8)
A 		3.1
(-1.8)
A 		5
B 4.8
(0.3)
A 		3.5
(-1.2)
A 		7.2
(3)
A 		5.8
(1.4)
A 		3.6
(-1.1)
A 		1.9
(-3)
A 		5
C 3.1
(-1.4)
A 		6
(1.8)
A 		2.6
(-1.9)
A 		7.1
(3)
A 		1.6
(-3)
A 		4.5
(0.2)
A 		6
avr 5
(1.3) 		4
(-1.1) 		4
(-1.1) 		5.7
(3) 		3.7
(-1.8) 		3.2
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-2.3)
A 		0.8
(-2.6)
A 		2.4
(3)
A 		0.7
(-3)
A 		2
B 1.9
(-2.3)
A 		2.7
(-1.5)
A 		1.1
(-3)
A 		7.6
(3)
A 		7
C 4.2
(-0.6)
A 		3.2
(-1.3)
A 		9.4
(3)
A 		0.8
(-3)
A 		9
avr 2.3
(-2.7) 		2.2
(-3) 		4.3
(3) 		3
(-0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.3
(0.7)
A 		0.9
(-1.2)
A 		0.5
(-3)
A 		1.1
(-0.2)
A 		1.8
(3)
A 		0.7
(-2.1)
A 		1
B 1.7
(3)
A 		1.2
(0)
A 		1.7
(3)
A 		1.5
(1.8)
A 		1.5
(1.8)
A 		0.7
(-3)
A 		1
C 1.1
(-0.2)
A 		1.8
(3)
A 		0.7
(-2.1)
A 		1.4
(1.2)
A 		0.5
(-3)
A 		1.5
(1.6)
A 		1
avr 1.4
(3) 		1.3
(1.5) 		1
(-3) 		1.3
(1.5) 		1.3
(1.5) 		1
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5884
Sequence Type Exemplar sequence
Representative Public ID C08E3.3 NCBI
Target Description C08E3.3 /REP_DB=WormBase Gene ID /WP=CE08006 /TR=O17193 /GB=AAB70964.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061606 NCBI Caenorhabditis elegans C08E3.3 (C08E3.3) mRNA, complete cds. 11/11 A 
SNAP00000042043 ENSEMBL cdna:SNAP chromosome:CEL140:II:1604908:1606147:-1 11/11 None
GENEFINDER00000042067 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1604810:1606147:-1 11/11 None
C08E3.3 ENSEMBL cdna:known chromosome:CEL140:II:1604670:1606147:-1 gene:C08E3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1605587-1606146(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-33
Ensembl C08E3.3
Entrez Gene 173533 Entrez gene
SwissProt O17193 EMBL-EBI
WormBase CE28531 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 1.0E-152
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 1.0E-124
blast AAB70964 Hypothetical protein C08E3.3 [Caenorhabditis elegans] ref|NP_494007.1| C08E3.3 [Caenorhabditis elegans] 1.0E-115
blast AAB66200 Hypothetical protein F45C12.11 [Caenorhabditis elegans] ref|NP_494049.1| F45C12.11 [Caenorhabditis elegans] 3.0E-48
blast CAE72470 Hypothetical protein CBG19644 [Caenorhabditis briggsae] 9.0E-46
blast AAB66209 Hypothetical protein F45C12.10 [Caenorhabditis elegans] ref|NP_494050.2| F45C12.10 [Caenorhabditis elegans] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.6E-32
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.0E-18
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.2E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 9.9E-26
Sequence
Target Sequence 
>C. ELEGANS:182624_AT
gaatattgccgctatgaaggaaggagattcgcaatctacaacaagtgaacaacattttgg
actaccttggtatttcaaggtcttctgcaaagacaaacatttgcagttatgcgtgtatta
tggagcccagcttatagccgaggagcaaagtatcgaagttgaatgtgatttcaaaatgat
tacccctactggcaagatatttgtcgaaaagacaggagttcgaaagtatggaggtgagac
gcagtacatcggaattggatttccaaagtttatgttatgggagaaaatgatgaaggagtt
tgtggtagaggacacggtgacggttgaagtttgtctgaagatcatagacacttggggatt
tgagaagaaggtgaaagtccgcaacttcgacgaggctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATTGCCGCTATGAAGGAAGGA 98 327 48 Antisense
GATTCGCAATCTACAACAAGTGAAC 292 433 73 Antisense
GAACAACATTTTGGACTACCTTGGT 483 351 94 Antisense
GGTATTTCAAGGTCTTCTGCAAAGA 450 503 116 Antisense
TATGCGTGTATTATGGAGCCCAGCT 660 655 155 Antisense
AGCCCAGCTTATAGCCGAGGAGCAA 325 83 171 Antisense
TTTCAAAATGATTACCCCTACTGGC 171 673 216 Antisense
TTACCCCTACTGGCAAGATATTTGT 484 681 227 Antisense
GGAGGTGAGACGCAGTACATCGGAA 194 517 277 Antisense
GAGGACACGGTGACGGTTGAAGTTT 263 403 355 Antisense
AAGTCCGCAACTTCGACGAGGCTAT 278 157 422 Antisense
Sequence Source Affymetrix Proprietary Database