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[182623_at]

Description R07E4.2 /REP_DB=WormBase Gene ID /WP=CE04817 /TR=Q21818 /GB=AAA80401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 73.3
(3)
A 		6.4
(-3)
A 		28.7
(-1)
A 		29.5
(-0.9)
A 		67
B 110.5
(3)
A 		25.4
(-2.5)
A 		18.1
(-3)
A 		21.7
(-2.8)
A 		92
C 75.7
(2.2)
A 		13.4
(-2.7)
A 		9.6
(-3)
A 		85.9
(3)
A 		76
avr 86.5
(3) 		15.1
(-3) 		18.8
(-2.7) 		45.7
(-0.4) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 20.8
(-0.6)
A 		13.1
(-1.9)
A 		42.9
(3)
A 		19
(-0.9)
A 		7.5
(-2.8)
A 		6.3
(-3)
A 		37
B 9.5
(-1.1)
A 		8.3
(-1.6)
A 		4.7
(-3)
A 		12.8
(0.2)
A 		19.7
(3)
A 		4.7
(-3)
A 		15
C 36.6
(3)
A 		34
(2.5)
A 		10.1
(-1.9)
A 		6.5
(-2.6)
A 		4.1
(-3)
A 		8.2
(-2.2)
A 		33
avr 22.3
(3) 		18.5
(1.6) 		19.2
(1.8) 		12.8
(-0.6) 		10.4
(-1.5) 		6.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 26.7
(3)
A 		1.4
(-3)
A 		7.5
(-1.6)
A 		4.3
(-2.3)
A 		25
B 35.3
(3)
A 		6.3
(-2.6)
A 		4.2
(-3)
A 		4.6
(-2.9)
A 		31
C 25.1
(3)
A 		3.8
(-2.9)
A 		3.3
(-3)
A 		14.5
(0.1)
A 		22
avr 29
(3) 		3.8
(-3) 		5
(-2.7) 		7.8
(-2) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.8
(-1.2)
A 		4.7
(-0.5)
A 		9.3
(3)
A 		4.8
(-0.5)
A 		2.3
(-2.4)
A 		1.5
(-3)
A 		8
B 3.3
(-1.1)
A 		2.8
(-1.5)
A 		1.1
(-3)
A 		3.4
(-1)
A 		8
(3)
A 		1.7
(-2.5)
A 		7
C 13.6
(3)
A 		10.4
(1.4)
A 		2.6
(-2.4)
A 		1.3
(-3)
A 		1.3
(-3)
A 		2.7
(-2.3)
A 		12
avr 6.9
(3) 		6
(1.9) 		4.3
(-0.2) 		3.2
(-1.5) 		3.9
(-0.7) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16796
Sequence Type Exemplar sequence
Representative Public ID R07E4.2 NCBI
Target Description R07E4.2 /REP_DB=WormBase Gene ID /WP=CE04817 /TR=Q21818 /GB=AAA80401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029668(11), NM_001029669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029668 NCBI Caenorhabditis elegans R07E4.1a (R07E4.1) mRNA, complete cds. 11/11 None
NM_001029669 NCBI Caenorhabditis elegans R07E4.1b (R07E4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014995 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5961180:5969896:1 11/11 None
R07E4.1a ENSEMBL cdna:known chromosome:CEL140:X:5959073:5970116:1 gene:R07E4.1 11/11 None
R07E4.1b ENSEMBL cdna:known chromosome:CEL140:X:5963359:5969896:1 gene:R07E4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014987 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5959072-5966816(+) 100.0 100.0
Public Domain and Genome References
Ensembl R07E4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024839 R07E4.1a [Caenorhabditis elegans] gb|AAV28337.1| Hypothetical protein R07E4.1a [Caenorhabditis elegans] 0.0
blast NP_001024840 R07E4.1b [Caenorhabditis elegans] gb|AAV28338.1| Hypothetical protein R07E4.1b [Caenorhabditis elegans] 0.0
blast T16700 hypothetical protein R07E4.1 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:182623_AT
gacgcagaagcacttcgagtcgttattgacaaaaatcaatttgatgtcactagtgcagtc
aacggaaattatgagctatatcccacgaaatggtcccttcttgacattgccatcaatttg
aacaatgaccacgacaagcgaataagttccctccagatccatttgagtttgctgaaacaa
atggaagatttccttgagaaaactgttcgccccagaatgttgcagagcgtttctgtagaa
gcaatttctcattcccgagccctcattcaattcaactacaaagagcctcaacagagcatt
attttgaaattcagaattcaatggtcggacaccgaagatttcaaaaccattcttggcgaa
ataattgaaccgcggccactggagaacaagattattttgcacaacttagagcatgggaaa
cattactattttacaattacttgtattggagtcaatggggaatcaaagccaatggtttgc
tggccgggcagaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCAGAAGCACTTCGAGTCGTTA 610 379 733 Antisense
GATGTCACTAGTGCAGTCAACGGAA 428 409 775 Antisense
TCCCACGAAATGGTCCCTTCTTGAC 445 597 813 Antisense
TCCCTTCTTGACATTGCCATCAATT 708 597 826 Antisense
GACAAGCGAATAAGTTCCCTCCAGA 410 365 865 Antisense
GTTCCCTCCAGATCCATTTGAGTTT 408 441 878 Antisense
TTCCTTGAGAAAACTGTTCGCCCCA 532 695 922 Antisense
TGTTCGCCCCAGAATGTTGCAGAGC 149 563 936 Antisense
TAGAAGCAATTTCTCATTCCCGAGC 279 653 968 Antisense
AAATAATTGAACCGCGGCCACTGGA 614 115 1091 Antisense
AATGGTTTGCTGGCCGGGCAGAATT 693 161 1203 Antisense
Sequence Source Affymetrix Proprietary Database