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[182622_at]

Description F59H6.6 /REP_DB=WormBase Gene ID /WP=CE20912 /TR=Q9N5Q5 /GB=AAF39855.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.8
(-3)
A 		6.3
(-2.8)
A 		23
(-1.1)
A 		64.4
(3)
P 		61
B 2.4
(-2.9)
A 		3.4
(-2.4)
A 		2.1
(-3)
A 		15.2
(3)
A 		13
C 3.3
(-2.6)
A 		14.7
(0.6)
A 		1.8
(-3)
A 		23.4
(3)
A 		22
avr 3.2
(-3) 		8.1
(-2.1) 		9
(-1.9) 		34.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		1.9
(-3)
A 		27.1
(3)
A 		2.4
(-2.9)
A 		3.5
(-2.6)
A 		8.8
(-1.4)
A 		25
B 0.6
(-3)
A 		9
(0.6)
A 		14.5
(3)
A 		4.6
(-1.3)
A 		1.2
(-2.7)
A 		0.9
(-2.9)
A 		14
C 1.3
(-3)
A 		12.9
(0.5)
A 		2.8
(-2.6)
A 		21.3
(3)
A 		4.2
(-2.1)
A 		1.7
(-2.9)
A 		20
avr 1.7
(-3) 		7.9
(-0.2) 		14.8
(3) 		9.4
(0.5) 		3
(-2.4) 		3.8
(-2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-3)
A 		1.4
(-3)
A 		6
(0.5)
A 		9.4
(3)
P 		8
B 0.8
(-2.3)
A 		0.8
(-2.3)
A 		0.5
(-3)
A 		3.2
(3)
A 		3
C 1.1
(-2.2)
A 		4.2
(3)
A 		0.6
(-3)
A 		3.9
(2.5)
A 		4
avr 1.1
(-3) 		2.1
(-1.6) 		2.4
(-1.2) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.7
(-2.9)
A 		5.9
(3)
A 		0.6
(-3)
A 		1.1
(-2.4)
A 		2.1
(-1.3)
A 		5
B 0.2
(-3)
A 		3
(2.1)
A 		3.5
(3)
A 		1.2
(-1.2)
A 		0.5
(-2.5)
A 		0.3
(-2.8)
A 		3
C 0.5
(-3)
A 		3.9
(2.4)
A 		0.7
(-2.7)
A 		4.3
(3)
A 		1.4
(-1.6)
A 		0.6
(-2.8)
A 		4
avr 0.4
(-3) 		2.5
(1.2) 		3.4
(3) 		2
(0.2) 		1
(-1.8) 		1
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5328
Sequence Type Exemplar sequence
Representative Public ID F59H6.6 NCBI
Target Description F59H6.6 /REP_DB=WormBase Gene ID /WP=CE20912 /TR=Q9N5Q5 /GB=AAF39855.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061750 NCBI Caenorhabditis elegans F59H6.6 (F59H6.6) mRNA, complete cds. 11/11 None
F59H6.6 ENSEMBL cdna:known chromosome:CEL140:II:2011488:2012473:-1 gene:F59H6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002440 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2011486-2012472(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59H6.6
Entrez Gene 186645 Entrez gene
SwissProt Q9N5Q5 EMBL-EBI
WormBase CE20912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39855 Hypothetical protein F59H6.6 [Caenorhabditis elegans] ref|NP_494151.1| F59H6.6 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:182622_AT
ttaacttttggttcgcacaacgtcgagtggcttctacaagggacaatggtaggaagtatg
agttattttcaggaaagaaaaatagacaacagtgcgccttttgtgcgagtgcgtgttttg
acagtattccacttttaaaacaaaaattcccgtacgccgatttcccaatgcctcaaattc
aactctcagaccacgaacaacaatcaaaggaaaactttattccaggtgaagctattgaaa
actggttttccgatcgtcgacttgctgtccaagaagatgcattgatgagaagtgagttac
ttttaaatattattcgttataaaatgttgcaattcaattcatttcaatttcaggacctga
agctgttgaacttctcgaaaaagaattccaaattactccttttcctgtgttttacaaaaa
acagaatctggccaaaaagatctccaatatctgattcgtttgaaaataattttgaagctc
ggccaaaattaaatcgaatatttattttgactaagaatgtaatgtacgatggaataatac
gggcttgcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAACTTTTGGTTCGCACAACGTCG 421 679 56 Antisense
ACAACGTCGAGTGGCTTCTACAAGG 60 111 72 Antisense
AACAGTGCGCCTTTTGTGCGAGTGC 331 137 143 Antisense
GAGTGCGTGTTTTGACAGTATTCCA 106 401 162 Antisense
TTTCCCAATGCCTCAAATTCAACTC 572 669 216 Antisense
TCAACTCTCAGACCACGAACAACAA 313 631 234 Antisense
GATCGTCGACTTGCTGTCCAAGAAG 546 417 307 Antisense
GGACCTGAAGCTGTTGAACTTCTCG 600 521 408 Antisense
GAATTCCAAATTACTCCTTTTCCTG 662 323 438 Antisense
GATCTCCAATATCTGATTCGTTTGA 701 417 494 Antisense
GATGGAATAATACGGGCTTGCTTGG 397 407 583 Antisense
Sequence Source Affymetrix Proprietary Database