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[182620_at] 7TM chemoreceptor, srt family

Description E03D2.4 /REP_DB=WormBase Gene ID /WP=CE16961 /TR=O44542 /GB=AAB94164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 44      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 69.8
(2.4)
A 		71.7
(2.6)
A 		75.7
(3)
A 		14.9
(-3)
A 		61
B 47.3
(1)
A 		67.8
(3)
A 		5
(-3)
A 		6
(-2.9)
A 		63
C 55.5
(2.3)
A 		54.8
(2.2)
A 		28.3
(-3)
A 		58.9
(3)
A 		31
avr 57.5
(1.9) 		64.8
(3) 		36.3
(-1.5) 		26.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 37.5
(-0.4)
A 		59.5
(3)
A 		42.3
(0.3)
A 		21
(-3)
A 		40.5
(0)
A 		29.5
(-1.7)
A 		39
B 44.2
(1.9)
A 		35.3
(0.2)
A 		19.3
(-3)
A 		49.6
(3)
A 		29.3
(-1)
A 		19.3
(-3)
A 		30
C 52.4
(2.2)
A 		58.8
(3)
A 		18.5
(-2.1)
A 		33.5
(-0.2)
A 		11.2
(-3)
A 		45.9
(1.4)
A 		48
avr 44.7
(1.4) 		51.2
(3) 		26.7
(-3) 		34.7
(-1) 		27
(-2.9) 		31.6
(-1.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.4
(3)
A 		15.6
(0.5)
A 		19.8
(1.6)
A 		2.2
(-3)
A 		23
B 15.1
(2.4)
A 		16.7
(3)
A 		1.2
(-3)
A 		1.3
(-3)
A 		16
C 18.4
(3)
A 		15.8
(1.2)
A 		9.9
(-3)
A 		9.9
(-3)
A 		9
avr 19.6
(3) 		16
(1.6) 		10.3
(-0.7) 		4.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.9
(-2.4)
A 		21.2
(3)
A 		9.2
(-1.5)
A 		5.3
(-3)
A 		12.2
(-0.4)
A 		7.2
(-2.3)
A 		16
B 15.4
(3)
A 		11.7
(0.9)
A 		4.7
(-3)
A 		13.1
(1.7)
A 		11.9
(1)
A 		7.2
(-1.6)
A 		11
C 19.4
(3)
A 		17.9
(2.4)
A 		4.7
(-2.6)
A 		6.7
(-1.8)
A 		3.6
(-3)
A 		15.4
(1.5)
A 		16
avr 13.9
(1.3) 		16.9
(3) 		6.2
(-3) 		8.4
(-1.8) 		9.2
(-1.3) 		9.9
(-0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15708
Sequence Type Exemplar sequence
Representative Public ID E03D2.4 NCBI
Target Description E03D2.4 /REP_DB=WormBase Gene ID /WP=CE16961 /TR=O44542 /GB=AAB94164.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071771 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-12) (srt-12) mRNA, complete cds. 11/11 None
GENEFINDER00000024582 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4240766:4242465:-1 11/11 None
E03D2.4 ENSEMBL cdna:known chromosome:CEL140:V:4240766:4242345:-1 gene:E03D2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024581 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4240765-4242574(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-12
Ensembl E03D2.4
Entrez Gene 184010 Entrez gene
SwissProt O44542 EMBL-EBI
WormBase CE37891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94164 Hypothetical protein E03D2.4 [Caenorhabditis elegans] ref|NP_504172.2| Serpentine Receptor, class T family member (srt-12) [Caenorhabditis elegans] 0.0
blast CAE58313 Hypothetical protein CBG01423 [Caenorhabditis briggsae] 1.0E-161
blast AAB04845 Serpentine receptor, class t protein 13 [Caenorhabditis elegans] ref|NP_504173.2| Serpentine Receptor, class T family member (srt-13) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504172.2 7 38-60,73-95,110-132,152-171,203-225,246-263,273-295
E03D2.4 7 38-60,73-95,110-132,152-171,203-225,246-263,273-295
GENEFINDER00000024582 8 7-29,65-87,100-122,137-159,179-198,230-252,273-290,300-322
Sequence
Target Sequence 
>C. ELEGANS:182620_AT
tttttcgagtcgtgttctgcttgatggtcttgtactggatttactcgtgggcttttacaa
aaccgttattgtttacgtctgaatatagttcctggtttttcgatccaaaaatagggaagg
aggcatacttttaccacagcattgatcatacaataaataacctagttgtttcaatggcaa
caacatctctttacatttatttgtgttaccatttgatctacaaaattgggtattcttcgt
caatgctgttgtacaggtcaaagcaacagataatcatgcaagccgtcattctttgtacat
tccatgcaattgctgcgtacatttacgtttacatgcaatttttccattcccctccttggc
taataattatcggtcaacttgcctggcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCGAGTCGTGTTCTGCTTGAT 351 675 656 Antisense
GTTCTGCTTGATGGTCTTGTACTGG 116 443 669 Antisense
TACTGGATTTACTCGTGGGCTTTTA 440 605 688 Antisense
GAGGCATACTTTTACCACAGCATTG 16 405 775 Antisense
GGCAACAACATCTCTTTACATTTAT 244 535 831 Antisense
GGTATTCTTCGTCAATGCTGTTGTA 311 505 884 Antisense
GCAAGCCGTCATTCTTTGTACATTC 440 319 933 Antisense
TTGTACATTCCATGCAATTGCTGCG 184 707 948 Antisense
TTACATGCAATTTTTCCATTCCCCT 526 683 984 Antisense
ATTCCCCTCCTTGGCTAATAATTAT 637 7 1001 Antisense
ATTATCGGTCAACTTGCCTGGCAAT 485 13 1021 Antisense
Sequence Source Affymetrix Proprietary Database