[Home] | [Total List]

[182618_at]

Description F48B9.1 /REP_DB=WormBase Gene ID /WP=CE04609 /TR=Q20558 /GB=AAA81754.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 57.9
(0.6)
A 		29.3
(-3)
A 		64.6
(1.4)
A 		76.9
(3)
A 		48
B 122.7
(3)
A 		87.9
(1.1)
A 		10
(-3)
A 		28.2
(-2)
A 		113
C 23.7
(-3)
A 		84.8
(0.6)
A 		91.2
(1)
A 		124.5
(3)
A 		101
avr 68.1
(0.6) 		67.3
(0.4) 		55.3
(-3) 		76.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 127.2
(3)
A 		16.1
(-2.5)
A 		6
(-3)
A 		70.1
(0.2)
A 		26.5
(-2)
A 		90.9
(1.2)
A 		121
B 27.3
(-1.4)
A 		64
(2.5)
A 		68.6
(3)
A 		12.9
(-3)
A 		58.7
(1.9)
A 		52.6
(1.3)
A 		56
C 10.5
(-3)
A 		140.1
(3)
A 		71
(-0.2)
A 		42.7
(-1.5)
A 		28.2
(-2.2)
A 		10.6
(-3)
A 		130
avr 55
(-0.1) 		73.4
(3) 		48.5
(-1.2) 		41.9
(-2.3) 		37.8
(-3) 		51.4
(-0.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 21.1
(3)
A 		6.4
(-3)
A 		16.9
(1.3)
A 		11.3
(-1)
A 		15
B 39.1
(3)
A 		21.7
(0.2)
A 		2.3
(-3)
A 		6
(-2.4)
A 		37
C 7.8
(-3)
A 		24.4
(1.2)
A 		31.8
(3)
A 		21
(0.3)
A 		24
avr 22.7
(3) 		17.5
(-0.2) 		17
(-0.5) 		12.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 23.4
(3)
A 		5.7
(-1.8)
A 		1.3
(-3)
A 		17.8
(1.5)
A 		8
(-1.2)
A 		22.1
(2.6)
A 		22
B 9.5
(-1.2)
A 		21.3
(2.3)
A 		16.7
(0.9)
A 		3.4
(-3)
A 		23.8
(3)
A 		19.6
(1.8)
A 		20
C 3.9
(-3)
A 		42.8
(3)
A 		18.1
(-0.8)
A 		8.6
(-2.2)
A 		9.1
(-2.2)
A 		3.6
(-3)
A 		39
avr 12.3
(-1.9) 		23.3
(3) 		12
(-2.1) 		9.9
(-3) 		13.6
(-1.3) 		15.1
(-0.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18612
Sequence Type Exemplar sequence
Representative Public ID F48B9.1 NCBI
Target Description F48B9.1 /REP_DB=WormBase Gene ID /WP=CE04609 /TR=Q20558 /GB=AAA81754.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076002 NCBI Caenorhabditis elegans F48B9.1 (F48B9.1) mRNA, complete cds. 11/11 None
SNAP00000005471 ENSEMBL cdna:SNAP chromosome:CEL140:X:2180891:2184596:1 9/11 None
GENEFINDER00000005476 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2180891:2185833:1 11/11 None
F48B9.1 ENSEMBL cdna:known chromosome:CEL140:X:2180891:2185847:1 gene:F48B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2180890-2185847(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48B9.1
Entrez Gene 185963 Entrez gene
SwissProt Q20558 EMBL-EBI
WormBase CE04609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81754 Hypothetical protein F48B9.1 [Caenorhabditis elegans] ref|NP_508403.1| F48B9.1 [Caenorhabditis elegans] 0.0
blast CAE68343 Hypothetical protein CBG14069 [Caenorhabditis briggsae] 1.0E-119
blast CAE68343 Hypothetical protein CBG14069 [Caenorhabditis briggsae] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:182618_AT
caacgttcgcttatgtgtacaccggttgaaaaaatgttcgtcaagaattcaagatctgct
cccgagatgcgggttcatgaaaccaaaatccaaccatttctaccttcgccatcaccatcg
aatgatgcgacaacaacaactagtgatcccagcgtctcatcagaaatttccatggagcaa
cccatccagcctattgttagtaacttgaagcttcgtttgagtgaaggtttatccgaaact
gtatcaccagcagcatcgccgatagtaaaaactaagagccggaaagagaagaaaacaaat
cagcaaatgttgaaagggtctgctagttcccccaatatgaattctcaaaatttgataatc
aaccggaaaaccaccgaggctgacgttgaaaacgacaaaccaaaaccgaatacaaacagg
acgttcgaagtggttacagttagtgttgtcaatgtggattttgctagaaaacccaaaaaa
tcggtgtatatcatggcgaaattcgatggtaaagatgtccaccgttcttcgaagttacga
agtgacaatctcgtccacgacttctccgttgagacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGTTCGCTTATGTGTACACCGG 396 185 1003 Antisense
GATCTGCTCCCGAGATGCGGGTTCA 239 419 1055 Antisense
AACAACAACTAGTGATCCCAGCGTC 405 133 1134 Antisense
TCCCAGCGTCTCATCAGAAATTTCC 690 597 1149 Antisense
CAACCCATCCAGCCTATTGTTAGTA 449 185 1180 Antisense
GAAACTGTATCACCAGCAGCATCGC 110 357 1237 Antisense
TTGAAAGGGTCTGCTAGTTCCCCCA 438 701 1312 Antisense
GAAAACCACCGAGGCTGACGTTGAA 35 355 1368 Antisense
ATGTCCACCGTTCTTCGAAGTTACG 255 41 1517 Antisense
ACGAAGTGACAATCTCGTCCACGAC 245 91 1539 Antisense
TCCACGACTTCTCCGTTGAGACAAC 355 589 1556 Antisense
Sequence Source Affymetrix Proprietary Database