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[182616_at]

Description T24A6.5 /REP_DB=WormBase Gene ID /WP=CE14132 /TR=O61938 /GB=AAC17793.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 04      6grp_cgc > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 34
(-0.9)
A 		19
(-3)
A 		47
(0.9)
A 		61.8
(3)
A 		43
B 27.3
(-3)
A 		41.1
(0.6)
A 		32.7
(-1.6)
A 		50
(3)
A 		23
C 56.8
(0.9)
A 		43.9
(-0.7)
A 		26.6
(-3)
A 		72.6
(3)
A 		46
avr 39.4
(-1.9) 		34.7
(-3) 		35.4
(-2.8) 		61.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 63.5
(3)
A 		30.7
(-0.3)
A 		37.5
(0.4)
A 		33.3
(-0.1)
A 		7.2
(-2.7)
A 		4.2
(-3)
A 		59
B 58.1
(3)
A 		47.2
(1.4)
A 		39.2
(0.3)
A 		34.8
(-0.4)
A 		16.8
(-3)
A 		36.3
(-0.2)
A 		41
C 17.7
(-2)
A 		17.4
(-2)
A 		57.8
(3)
A 		44.9
(1.4)
A 		9.3
(-3)
A 		13.2
(-2.5)
A 		49
avr 46.4
(3) 		31.8
(0.5) 		44.8
(2.7) 		37.7
(1.5) 		11.1
(-3) 		17.9
(-1.8) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.4
(3)
A 		4.1
(-3)
A 		12.3
(2.9)
A 		9
(0.5)
A 		8
B 8.7
(-0.9)
A 		10.2
(2)
A 		7.6
(-3)
A 		10.7
(3)
A 		3
C 18.8
(3)
A 		12.6
(-0.9)
A 		9.3
(-3)
A 		12.2
(-1.2)
A 		10
avr 13.3
(3) 		9
(-3) 		9.7
(-2) 		10.6
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.7
(3)
A 		10.9
(2.6)
A 		8.2
(1)
A 		8.4
(1.1)
A 		2.2
(-2.3)
A 		1
(-3)
A 		11
B 20.2
(3)
A 		15.7
(1)
A 		9.5
(-1.8)
A 		9.2
(-1.9)
A 		6.8
(-3)
A 		13.5
(0)
A 		13
C 6.6
(-1.2)
A 		5.3
(-1.8)
A 		14.7
(3)
A 		9
(0.1)
A 		3
(-3)
A 		4.4
(-2.3)
A 		12
avr 12.8
(3) 		10.6
(1.5) 		10.8
(1.6) 		8.9
(0.3) 		4
(-3) 		6.3
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15825
Sequence Type Exemplar sequence
Representative Public ID T24A6.5 NCBI
Target Description T24A6.5 /REP_DB=WormBase Gene ID /WP=CE14132 /TR=O61938 /GB=AAC17793.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071585 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-66) (srbc-66) mRNA, complete cds. 11/11 None
GENEFINDER00000027444 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3525120:3532599:1 11/11 None
T24A6.5 ENSEMBL cdna:known chromosome:CEL140:V:3530529:3532206:1 gene:T24A6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3530528-3532206(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-66
Ensembl T24A6.5
Entrez Gene 188824 Entrez gene
SwissProt O61938 EMBL-EBI
WormBase CE14132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17793 Serpentine receptor, class bc (class b-like) protein 66 [Caenorhabditis elegans] ref|NP_503986.1| Serpentine Receptor, class BC (class B-like) family member (srbc-66) [Caenorhabditis elegans] 1.0E-154
blast AAC17805 Seven tm receptor protein 260 [Caenorhabditis elegans] ref|NP_503985.1| Seven TM Receptor family member (str-260) [Caenorhabditis elegans] 1.0E-146
blast AAC17794 Hypothetical protein T24A6.7 [Caenorhabditis elegans] ref|NP_503984.1| T24A6.7 [Caenorhabditis elegans] 1.0E-114
blast AAC17793 Serpentine receptor, class bc (class b-like) protein 66 [Caenorhabditis elegans] ref|NP_503986.1| Serpentine Receptor, class BC (class B-like) family member (srbc-66) [Caenorhabditis elegans] 1.0E-112
blast NP_740807 Serpentine Receptor, class BC (class B-like) family member (srbc-64) [Caenorhabditis elegans] gb|AAL32239.1| Serpentine receptor, class bc (class b-like) protein 64 [Caenorhabditis elegans] 6.0E-99
blast CAB07629 Hypothetical protein F54B8.9 [Caenorhabditis elegans] ref|NP_506954.1| Serpentine Receptor, class BC (class B-like) family member (srbc-51) [Caenorhabditis elegans] 6.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.4E-117
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-4
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.1E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503986.1 7 10-32,45-67,82-104,125-144,180-202,215-237,247-269
T24A6.5 7 10-32,45-67,82-104,125-144,180-202,215-237,247-269
GENEFINDER00000027444 9 261-280,300-322,374-396,422-444,512-534,555-574,610-632,645-667,677-699
Sequence
Target Sequence 
>C. ELEGANS:182616_AT
gacattctacttggtttggcctacaatccccctcggcgctatccgagcgaccctggttct
cctgataactctcgatcgagttgtcgcctcgtttttcccaatcttctaccacaaccatcg
acgccgaatcccgattcttgcggtcatctcttgtgttattacatttggactctccgacca
tattgtgctctttgagtactgtaagtacacggtagatgtccccttggcttgtgataactt
taattgtgttattaaccagtgtttttttaactactggtcgttacgagaccaggttcaata
ttttattatcggagttttgtcagtgcttctttgctttcgtctttttatctggaataacta
tgtggcgattcatgcgaatcaggttttgtctagagccactcgaattgcacttctcgactc
ggttatcatattttccttcagcatcatcccttcatttatatttgagcttctccctacact
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTCTACTTGGTTTGGCCTACA 259 371 252 Antisense
GTTCTCCTGATAACTCTCGATCGAG 258 443 307 Antisense
GAATCCCGATTCTTGCGGTCATCTC 334 329 377 Antisense
ACATTTGGACTCTCCGACCATATTG 256 101 412 Antisense
ATGTCCCCTTGGCTTGTGATAACTT 557 45 467 Antisense
GTTTTGTCAGTGCTTCTTTGCTTTC 638 447 565 Antisense
CTTTGCTTTCGTCTTTTTATCTGGA 128 223 580 Antisense
TCAGGTTTTGTCTAGAGCCACTCGA 607 623 630 Antisense
ATCATATTTTCCTTCAGCATCATCC 236 31 676 Antisense
CAGCATCATCCCTTCATTTATATTT 184 205 690 Antisense
TATATTTGAGCTTCTCCCTACACTA 430 661 708 Antisense
Sequence Source Affymetrix Proprietary Database