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[182615_at]

Description C54D10.9 /REP_DB=WormBase Gene ID /WP=CE05505 /TR=Q18829 /GB=CAA99801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 91      6grp_total > 93      4grp_total > 27      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 104
(-0.3)
P 		94.8
(-0.7)
P 		45.8
(-3)
A 		174.5
(3)
P 		129
B 85.3
(-3)
P 		138
(3)
P 		104.4
(-0.8)
A 		97.2
(-1.6)
P 		53
C 111.7
(-2)
P 		138.5
(0.2)
A 		99.1
(-3)
M 		173.8
(3)
P 		75
avr 100.3
(-1.4) 		123.8
(0.7) 		83.1
(-3) 		148.5
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 111.3
(-2.9)
P 		104.1
(-3)
P 		186.2
(-2)
P 		287.3
(-0.7)
P 		576.9
(3)
P 		153.7
(-2.4)
P 		473
B 77
(-3)
P 		165.8
(-2)
P 		154.6
(-2.1)
P 		272.3
(-0.8)
P 		607.4
(3)
P 		190
(-1.7)
P 		530
C 92.7
(-2.3)
P 		155.6
(-1.4)
P 		49.3
(-3)
P 		332.2
(1.3)
P 		444.9
(3)
P 		204.8
(-0.6)
P 		396
avr 93.7
(-3) 		141.8
(-2.4) 		130
(-2.5) 		297.3
(-0.3) 		543.1
(3) 		182.8
(-1.8) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 37.9
(3)
P 		20.6
(-1)
P 		12
(-3)
A 		25.5
(0.1)
P 		26
B 27.2
(-0.1)
P 		34.1
(3)
P 		24.2
(-1.4)
A 		20.7
(-3)
P 		13
C 37
(1.4)
P 		39.8
(3)
A 		34.6
(0)
M 		29.3
(-3)
P 		11
avr 34
(3) 		31.5
(1.6) 		23.6
(-3) 		25.2
(-2.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 20.5
(-3)
P 		37
(-2.4)
P 		40.6
(-2.2)
P 		72.9
(-1)
P 		174.1
(3)
P 		37.4
(-2.3)
P 		154
B 26.8
(-3)
P 		55.2
(-2.2)
P 		37.6
(-2.7)
P 		72.1
(-1.8)
P 		246.8
(3)
P 		70.9
(-1.8)
P 		220
C 34.3
(-2)
P 		47.5
(-1.4)
P 		12.6
(-3)
P 		66.8
(-0.5)
P 		144
(3)
P 		68.6
(-0.4)
P 		131
avr 27.2
(-3) 		46.6
(-2.3) 		30.3
(-2.9) 		70.6
(-1.4) 		188.3
(3) 		59
(-1.8) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13774
Sequence Type Exemplar sequence
Representative Public ID C54D10.9 NCBI
Target Description C54D10.9 /REP_DB=WormBase Gene ID /WP=CE05505 /TR=Q18829 /GB=CAA99801.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073721 NCBI Caenorhabditis elegans C54D10.9 (C54D10.9) mRNA, complete cds. 11/11 None
SNAP00000038028 ENSEMBL cdna:SNAP chromosome:CEL140:V:12450087:12451240:1 11/11 None
GENEFINDER00000038036 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12450087:12451240:1 11/11 None
C54D10.9 ENSEMBL cdna:known chromosome:CEL140:V:12450087:12451249:1 gene:C54D10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12450086-12451249(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D10.9
Entrez Gene 183786 Entrez gene
SwissProt Q18829 EMBL-EBI
WormBase CE05505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99801 Hypothetical protein C54D10.9 [Caenorhabditis elegans] ref|NP_506122.1| C54D10.9 [Caenorhabditis elegans] 1.0E-105
blast CAA99801 Hypothetical protein C54D10.9 [Caenorhabditis elegans] ref|NP_506122.1| C54D10.9 [Caenorhabditis elegans] 1.0E-104
blast CAE75491 Hypothetical protein CBG23495 [Caenorhabditis briggsae] 2.0E-86
blast CAE75491 Hypothetical protein CBG23495 [Caenorhabditis briggsae] 3.0E-85
Sequence
Target Sequence 
>C. ELEGANS:182615_AT
gaagtcatcgtggtcacttgcttttattattttgaacttgtctagaatttgttatggtct
caacaactgtccaactataccgataagaagtgtaattcagcgagcagctgaaacaacaaa
agatgcagtgacccaaatgcaaatgattcgaagaattcttgaagatatttatggaggaac
atggggagttcttgtaattagagatcctgcgttagtttcaaaagatgttcattggacatt
cccggatcataataatttagatggatcaccggcattttgtctcacagtagtcaatgaatg
gcaatataacgtattcaaaaccggtcaaatagattcaccacaacgtgtaacaattgacaa
catgatacaaagattctcttcaggaacactgccaaaaattgggaagttggtgaatgggaa
gagtaaggctaaattccttgatctgaacgctatgaaacaagttccgaggcgatattcaat
tgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCATCGTGGTCACTTGCTTTT 548 335 15 Antisense
TCAACAACTGTCCAACTATACCGAT 573 629 74 Antisense
ATTAGAGATCCTGCGTTAGTTTCAA 167 11 211 Antisense
GTTCATTGGACATTCCCGGATCATA 101 445 241 Antisense
AGATGGATCACCGGCATTTTGTCTC 445 67 273 Antisense
ACCGGCATTTTGTCTCACAGTAGTC 308 89 282 Antisense
AATAGATTCACCACAACGTGTAACA 578 171 342 Antisense
GATTCTCTTCAGGAACACTGCCAAA 553 431 386 Antisense
GGCTAAATTCCTTGATCTGAACGCT 284 539 441 Antisense
AACGCTATGAAACAAGTTCCGAGGC 677 141 460 Antisense
GTTCCGAGGCGATATTCAATTGCAC 421 441 475 Antisense
Sequence Source Affymetrix Proprietary Database