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[182613_at]

Description W05B10.5 /REP_DB=WormBase Gene ID /WP=CE14610 /TR=P91574 /GB=CAA98965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 04      6grp_cgc > 64      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 1.1
(-3)
A 		2.9
(-2.8)
A 		4.3
(-2.7)
A 		69.4
(3)
P 		68
B 31.9
(3)
A 		8.6
(-2.2)
A 		4.9
(-3)
A 		22.8
(1)
A 		27
C 21.5
(-2.5)
A 		16.2
(-3)
A 		17.3
(-2.9)
A 		74.6
(3)
P 		58
avr 18.2
(-1.8) 		9.2
(-2.9) 		8.8
(-3) 		55.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.2
(-0.1)
A 		12.9
(-0.1)
A 		24
(3)
A 		15.6
(0.6)
A 		23.6
(2.9)
A 		2.8
(-3)
A 		21
B 0.8
(-3)
A 		7
(-1)
A 		3.6
(-2.1)
A 		11.5
(0.4)
A 		19.7
(3)
A 		3.7
(-2.1)
A 		19
C 1.2
(-3)
A 		34.7
(3)
A 		2.3
(-2.8)
A 		11.3
(-1.2)
A 		2.6
(-2.7)
A 		11
(-1.2)
A 		34
avr 5.1
(-3) 		18.2
(3) 		10
(-0.8) 		12.8
(0.5) 		15.3
(1.7) 		5.8
(-2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.4
(-3)
A 		0.6
(-2.9)
A 		1.1
(-2.6)
A 		10.2
(3)
P 		10
B 10.2
(3)
A 		2.1
(-2.3)
A 		1.1
(-3)
A 		4.9
(-0.5)
A 		9
C 7.1
(-1.2)
A 		4.7
(-3)
A 		6
(-2)
A 		12.6
(3)
P 		8
avr 5.9
(0) 		2.5
(-3) 		2.7
(-2.8) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.4
(-1.4)
A 		4.6
(0.7)
A 		5.2
(1.2)
A 		4
(0.1)
A 		7.1
(3)
A 		0.7
(-3)
A 		6
B 0.3
(-3)
A 		2.3
(-1.4)
A 		0.9
(-2.5)
A 		3
(-0.9)
A 		8
(3)
A 		1.4
(-2.1)
A 		8
C 0.4
(-3)
A 		10.6
(3)
A 		0.6
(-2.9)
A 		2.3
(-1.9)
A 		0.8
(-2.8)
A 		3.7
(-1.1)
A 		10
avr 1
(-3) 		5.8
(3) 		2.2
(-1.5) 		3.1
(-0.4) 		5.3
(2.4) 		1.9
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14607
Sequence Type Exemplar sequence
Representative Public ID W05B10.5 NCBI
Target Description W05B10.5 /REP_DB=WormBase Gene ID /WP=CE14610 /TR=P91574 /GB=CAA98965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073766 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-116) (srx-116) mRNA, complete cds. 11/11 None
GENEFINDER00000011554 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12673497:12675316:1 11/11 None
W05B10.5 ENSEMBL cdna:known chromosome:CEL140:V:12673497:12675316:1 gene:W05B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12673496-12675316(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srx-116
Ensembl W05B10.5
Entrez Gene 189212 Entrez gene
SwissProt P91574 EMBL-EBI
WormBase CE14610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98965 Hypothetical protein W05B10.5 [Caenorhabditis elegans] ref|NP_506167.1| Serpentine Receptor, class X family member (srx-116) [Caenorhabditis elegans] 0.0
blast CAE63964 Hypothetical protein CBG08552 [Caenorhabditis briggsae] 1.0E-131
blast CAE64597 Hypothetical protein CBG09352 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506167.1 6 22-44,56-78,98-120,133-155,183-205,251-273
W05B10.5 6 22-44,56-78,98-120,133-155,183-205,251-273
GENEFINDER00000011554 6 22-44,56-78,98-120,133-155,183-205,251-273
Sequence
Target Sequence 
>C. ELEGANS:182613_AT
tttgcagtattttttcctcacgtttacagtagaaactatcgttatgcaccaagcagtttt
ggcatactaatttgccttacattggcatttattgtatttattgcattttttcctgagggc
tgtcattttttgtataaccttcaatatattggatggcttcctgaggaaagtatgtgcaca
tcggttagacgagtcatttttcttgtttcaatgtttattattgtgattttcacgactttc
tgtggcattttgctattcttgaaattaatcgcagactcgcaaagtctagcgatgactgat
tctcaatcatcaactcgtcgtctccagcatcaaaaaaatctactgcaaactttagtacaa
aatggtctaatattagttgacactttgaatacaacagtcacttatcaagtattttcactt
ttgttttttcaatttatcactttagcattttcaatggtttttattcggaccgttgaaggg
tttataatgattgcaatgaatgaacgaatcaataaaggagcaaaattactgattggcatg
aaaagtgcggagagtagtcaatctcgtattgggcatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCAGTATTTTTTCCTCACGTTT 599 667 367 Antisense
GAAACTATCGTTATGCACCAAGCAG 457 357 398 Antisense
TTATTGCATTTTTTCCTGAGGGCTG 221 677 464 Antisense
TTCCTGAGGGCTGTCATTTTTTGTA 533 697 476 Antisense
GTGCACATCGGTTAGACGAGTCATT 303 481 540 Antisense
ACGACTTTCTGTGGCATTTTGCTAT 371 93 598 Antisense
GAAATTAATCGCAGACTCGCAAAGT 471 361 627 Antisense
GATTCTCAATCATCAACTCGTCGTC 537 431 664 Antisense
CTCGTCGTCTCCAGCATCAAAAAAA 179 233 680 Antisense
TCAATGGTTTTTATTCGGACCGTTG 574 611 817 Antisense
GTAGTCAATCTCGTATTGGGCATAC 613 455 920 Antisense
Sequence Source Affymetrix Proprietary Database