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[182612_at]

Description C30E1.7 /REP_DB=WormBase Gene ID /WP=CE08474 /TR=O17330 /GB=AAB71252.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 21.1
(-3)
A 		38.8
(-1)
A 		39.6
(-0.9)
A 		73.6
(3)
A 		53
B 4.5
(-3)
A 		16.6
(3)
A 		16.6
(3)
A 		11
(0.2)
A 		12
C 28.9
(2.5)
A 		30.9
(3)
A 		5.8
(-3)
A 		6.1
(-2.9)
A 		25
avr 18.2
(-3) 		28.8
(2.3) 		20.7
(-1.8) 		30.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 64.6
(3)
A 		9.8
(-3)
A 		49.8
(1.4)
A 		30.9
(-0.7)
A 		45.5
(0.9)
A 		29.4
(-0.9)
A 		55
B 27.7
(-1.1)
A 		14.4
(-3)
A 		44.9
(1.4)
A 		55.7
(3)
P 		43.6
(1.2)
P 		34.6
(-0.1)
A 		41
C 43.2
(3)
A 		20
(-0.8)
A 		31.7
(1.1)
P 		11.9
(-2.1)
A 		6.4
(-3)
A 		21.4
(-0.6)
A 		37
avr 45.2
(3) 		14.7
(-3) 		42.1
(2.4) 		32.8
(0.6) 		31.8
(0.4) 		28.5
(-0.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.7
(-3)
A 		8.4
(-1.6)
A 		10.3
(2)
A 		10.8
(3)
A 		3
B 1.4
(-3)
A 		4.1
(3)
A 		3.9
(2.6)
A 		2.3
(-1)
A 		3
C 9.6
(3)
A 		8.9
(2.5)
A 		2
(-2.3)
A 		1
(-3)
A 		9
avr 6.2
(0.8) 		7.1
(3) 		5.4
(-1.3) 		4.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.9
(1.9)
A 		3.5
(-3)
A 		10.8
(1.3)
A 		7.8
(-0.5)
A 		13.7
(3)
A 		7.2
(-0.8)
A 		10
B 9.6
(-0.8)
A 		4.8
(-3)
A 		10.9
(-0.2)
A 		14.8
(1.7)
P 		17.7
(3)
P 		12.9
(0.8)
A 		13
C 16
(3)
A 		6.1
(-1.3)
A 		8.1
(-0.4)
P 		2.4
(-2.9)
A 		2.1
(-3)
A 		7.1
(-0.8)
A 		14
avr 12.5
(3) 		4.8
(-3) 		9.9
(1) 		8.3
(-0.3) 		11.2
(2) 		9.1
(0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17718
Sequence Type Exemplar sequence
Representative Public ID C30E1.7 NCBI
Target Description C30E1.7 /REP_DB=WormBase Gene ID /WP=CE08474 /TR=O17330 /GB=AAB71252.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078334 NCBI Caenorhabditis elegans C30E1.7 (C30E1.7) mRNA, complete cds. 11/11 None
SNAP00000041123 ENSEMBL cdna:SNAP chromosome:CEL140:X:16914392:16915383:1 10/11 None
GENEFINDER00000041128 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16914392:16916713:1 10/11 None
C30E1.7 ENSEMBL cdna:known chromosome:CEL140:X:16914943:16915459:1 gene:C30E1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16914942-16915459(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.7
Entrez Gene 183050 Entrez gene
SwissProt O17330 EMBL-EBI
WormBase CE08474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71251 Hypothetical protein C30E1.6 [Caenorhabditis elegans] ref|NP_510736.2| C30E1.6 [Caenorhabditis elegans] 1.0E-104
blast AAB71252 Hypothetical protein C30E1.7 [Caenorhabditis elegans] ref|NP_510735.1| C30E1.7 [Caenorhabditis elegans] 1.0E-86
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 6.0E-70
blast AAB71252 Hypothetical protein C30E1.7 [Caenorhabditis elegans] ref|NP_510735.1| C30E1.7 [Caenorhabditis elegans] 2.0E-66
blast AAB71252 Hypothetical protein C30E1.7 [Caenorhabditis elegans] ref|NP_510735.1| C30E1.7 [Caenorhabditis elegans] 6.0E-66
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 6.0E-38
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 5.0E-37
blast AAB53816 Hypothetical protein C08A9.4 [Caenorhabditis elegans] ref|NP_510762.1| C08A9.4 [Caenorhabditis elegans] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510735.1 3 21-40,68-90,111-128
C30E1.7 3 21-40,68-90,111-128
SNAP00000041123 4 67-89,154-176,202-224,245-262
GENEFINDER00000041128 6 51-73,155-177,203-225,344-363,367-389,402-424
Sequence
Target Sequence 
>C. ELEGANS:182612_AT
aacatttcagcttcttatttttccaagtatttggctcaattttacctgcattaacaacac
ttttcaattttaatcataacccaagcaatttggatacttgctatttcaactacaagtgtt
cttacaactttttgactttcaagtcgtggaattcaatgatgagtgcaagttctctcgtct
ttatcggacttttgaactttctcgttggctatttgccttgctgtaagaaaccatcaccgg
gacccaatggactacaagagatcaatgctccgaaaaacgtttttctccttggattgatag
ttttgggcatgttatggacaatttcaaacagctgcccaagtgatgaaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTCAGCTTCTTATTTTTCCA 4 139 68 Antisense
TATTTGGCTCAATTTTACCTGCATT 160 661 95 Antisense
TACCTGCATTAACAACACTTTTCAA 474 649 110 Antisense
GATGAGTGCAAGTTCTCTCGTCTTT 450 411 225 Antisense
AGTTCTCTCGTCTTTATCGGACTTT 25 65 235 Antisense
GGACTTTTGAACTTTCTCGTTGGCT 343 525 253 Antisense
CTCGTTGGCTATTTGCCTTGCTGTA 451 233 268 Antisense
CCTTGCTGTAAGAAACCATCACCGG 15 269 283 Antisense
CATCACCGGGACCCAATGGACTACA 569 209 299 Antisense
AACGTTTTTCTCCTTGGATTGATAG 16 143 343 Antisense
AACAGCTGCCCAAGTGATGAAACAC 706 133 394 Antisense
Sequence Source Affymetrix Proprietary Database