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[182611_at] 7TM chemoreceptor, srw family

Description ZK488.9 /REP_DB=WormBase Gene ID /WP=CE15367 /TR=O17023 /GB=AAB69956.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 43      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 14.1
(-0.4)
A 		10.2
(-2.2)
A 		21.3
(3)
A 		8.5
(-3)
A 		13
B 5.4
(-0.7)
A 		4.6
(-1.7)
A 		8.5
(3)
A 		3.5
(-3)
A 		5
C 4.6
(-3)
A 		47.1
(3)
A 		6.2
(-2.8)
A 		7.5
(-2.6)
A 		43
avr 8
(-2.4) 		20.6
(3) 		12
(-0.7) 		6.5
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 4.9
(-3)
A 		6.7
(-2.7)
A 		25.3
(-0.1)
A 		47.2
(3)
A 		40.2
(2)
A 		19.4
(-0.9)
A 		42
B 2.6
(-2.9)
A 		3.8
(-2.6)
A 		2.2
(-3)
A 		9.1
(-1.4)
A 		27.7
(3)
A 		3
(-2.8)
A 		26
C 8
(-2.5)
A 		37.7
(0.8)
A 		58.4
(3)
A 		48.7
(1.9)
A 		3.2
(-3)
A 		13.4
(-1.9)
A 		55
avr 5.2
(-3) 		16.1
(-0.8) 		28.6
(1.7) 		35
(3) 		23.7
(0.7) 		11.9
(-1.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.2
(2.5)
A 		2.2
(-1.6)
A 		5.6
(3)
A 		1.2
(-3)
A 		4
B 1.7
(1.6)
A 		1.1
(-1.2)
A 		2
(3)
A 		0.7
(-3)
A 		1
C 1.5
(-2.9)
A 		13.5
(3)
A 		2.1
(-2.6)
A 		1.3
(-3)
A 		12
avr 2.8
(-0.7) 		5.6
(3) 		3.2
(-0.2) 		1.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.4
(-2.2)
A 		5.5
(-0.5)
A 		12
(2.9)
A 		12.1
(3)
A 		4.7
(-1)
A 		11
B 0.9
(-2.8)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		2.4
(-1.9)
A 		11.2
(3)
A 		1.1
(-2.7)
A 		11
C 3
(-2.1)
A 		11.5
(1.5)
A 		14.9
(3)
A 		9.8
(0.8)
A 		1
(-3)
A 		4.5
(-1.5)
A 		14
avr 1.6
(-3) 		5.1
(0.2) 		7
(2) 		8.1
(3) 		8.1
(3) 		3.4
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15197
Sequence Type Exemplar sequence
Representative Public ID ZK488.9 NCBI
Target Description ZK488.9 /REP_DB=WormBase Gene ID /WP=CE15367 /TR=O17023 /GB=AAB69956.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070860(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070860 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-109) (srw-109) mRNA, complete cds. 9/11 None
ZK488.9 ENSEMBL cdna:known chromosome:CEL140:V:606610:608773:-1 gene:ZK488.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016996 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:606245-608773(-) 90.09 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-109
Ensembl ZK488.9
Entrez Gene 191334 Entrez gene
SwissProt O17023 EMBL-EBI
WormBase CE34459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69956 Serpentine receptor, class w protein 109 [Caenorhabditis elegans] ref|NP_503261.2| Serpentine Receptor, class W family member (srw-109) [Caenorhabditis elegans] 0.0
blast NP_503232 Serpentine Receptor, class W family member (srw-107) [Caenorhabditis elegans] gb|AAC69087.2| Serpentine receptor, class w protein 107 [Caenorhabditis elegans] 1.0E-104
blast AAP40513 Serpentine receptor, class w protein 101 [Caenorhabditis elegans] ref|NP_001024317.1| Serpentine Receptor, class W family member (srw-101) [Caenorhabditis elegans] 2.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503261.2 5 24-46,146-168,216-238,271-293,308-330
ZK488.9 5 24-46,146-168,216-238,271-293,308-330
Sequence
Target Sequence 
>C. ELEGANS:182611_AT
agacatcacatcttggtggcttcaagattactttagacgatgtagttcttggttggatat
ttttattgcgaacgtgcggtatattataatgagaaaagtctccggtgcgagctgtgctga
gcatcaggacatcaacaaagtatataaatataccataaatttacgtccaataccaactga
taacaaaatgctacttattcgaacttacatcttcctagatgtaatattttctcatttcct
tccaagccaagcttttccaattcttaccgtacttttgctacgcaaaattcagaaaatgga
gaaatcaagaccagtagttcgaaacaatagggtcgctgaaaataacgaagacaagcatcc
gctttcgacaaacctgataatttttctgacaatttcgtcgtttctggcagatgctccatt
gggatgtattgttatgataaagctcttcattccatctggcaatagacggataaaaaaatt
gaatttttttaactatgatatttggtcatatttgtaccatatacgtgttttagggcaatt
tgccgctctactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACATCACATCTTGGTGGCTTCAA 309 71 312 Antisense
AGAAAAGTCTCCGGTGCGAGCTGTG 169 73 403 Antisense
GCGAGCTGTGCTGAGCATCAGGACA 141 289 418 Antisense
TATTCGAACTTACATCTTCCTAGAT 599 643 507 Antisense
TTCCTTCCAAGCCAAGCTTTTCCAA 313 699 547 Antisense
TTCCAATTCTTACCGTACTTTTGCT 404 659 566 Antisense
CATCCGCTTTCGACAAACCTGATAA 138 211 667 Antisense
GACAATTTCGTCGTTTCTGGCAGAT 159 365 699 Antisense
GTTTCTGGCAGATGCTCCATTGGGA 348 451 711 Antisense
ATAAAGCTCTTCATTCCATCTGGCA 200 25 748 Antisense
TTAGGGCAATTTGCCGCTCTACTCC 479 679 841 Antisense
Sequence Source Affymetrix Proprietary Database