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[182609_at]

Description B0496.6 /REP_DB=WormBase Gene ID /WP=CE06718 /TR=Q17518 /GB=AAK18877.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 32.2
(-1.2)
A 		54
(0.8)
A 		12.4
(-3)
A 		78.1
(3)
A 		66
B 62
(3)
A 		49.3
(1.3)
A 		16.4
(-3)
A 		61
(2.9)
A 		46
C 38.4
(-2.5)
A 		70.5
(-0.4)
A 		31.4
(-3)
A 		121.3
(3)
P 		90
avr 44.2
(-0.8) 		57.9
(0.4) 		20.1
(-3) 		86.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 45
(1.4)
A 		28.3
(-0.7)
A 		57.5
(3)
A 		14.9
(-2.5)
A 		10.7
(-3)
A 		47.3
(1.7)
A 		47
B 24.5
(-0.6)
A 		54.2
(3)
A 		4.9
(-3)
A 		14.5
(-1.8)
A 		39.1
(1.2)
A 		40.5
(1.3)
P 		49
C 24.2
(-0.4)
A 		46.5
(3)
A 		9
(-2.8)
A 		7.6
(-3)
A 		41.5
(2.2)
A 		40.4
(2.1)
P 		39
avr 31.2
(0.7) 		43
(3) 		23.8
(-0.8) 		12.3
(-3) 		30.4
(0.5) 		42.7
(2.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.7
(3)
A 		11.7
(3)
A 		3.2
(-3)
A 		11.4
(2.8)
A 		9
B 19.8
(3)
A 		12.2
(0.1)
A 		3.8
(-3)
A 		13
(0.5)
A 		16
C 12.7
(-1.9)
A 		20.3
(2.9)
A 		11
(-3)
A 		20.5
(3)
P 		10
avr 14.7
(2.8) 		14.7
(2.8) 		6
(-3) 		15
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(0.3)
A 		10.1
(1.5)
A 		12.5
(3)
A 		3.8
(-2.6)
A 		3.2
(-3)
A 		11.5
(2.4)
A 		9
B 8.5
(-0.4)
A 		18.1
(3)
A 		1.2
(-3)
A 		3.8
(-2.1)
A 		15.9
(2.2)
A 		15.1
(1.9)
P 		17
C 9
(0.5)
A 		14.2
(3)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		13.4
(2.6)
A 		13.5
(2.7)
P 		13
avr 8.6
(0) 		14.1
(3) 		5.3
(-1.8) 		3
(-3) 		10.8
(1.2) 		13.4
(2.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8438
Sequence Type Exemplar sequence
Representative Public ID B0496.6 NCBI
Target Description B0496.6 /REP_DB=WormBase Gene ID /WP=CE06718 /TR=Q17518 /GB=AAK18877.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068781 NCBI Caenorhabditis elegans B0496.6 (B0496.6) mRNA, complete cds. 11/11 None
SNAP00000020639 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7419136:7419955:1 11/11 None
GENEFINDER00000020652 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7419136:7419955:1 11/11 None
B0496.6 ENSEMBL cdna:known chromosome:CEL140:IV:7419136:7419955:1 gene:B0496.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7419141-7419961(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0496.6
Entrez Gene 182009 Entrez gene
SwissProt Q17518 EMBL-EBI
WormBase CE06718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18877 Hypothetical protein B0496.6 [Caenorhabditis elegans] ref|NP_501182.1| B0496.6 [Caenorhabditis elegans] 1.0E-129
blast CAE61875 Hypothetical protein CBG05860 [Caenorhabditis briggsae] 1.0E-75
blast CAA93481 Hypothetical protein C36H8.1 [Caenorhabditis elegans] ref|NP_502434.1| C36H8.1 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501182.1 3 29-51,56-75,113-135
B0496.6 3 29-51,56-75,113-135
SNAP00000020639 3 29-51,56-75,113-135
GENEFINDER00000020652 3 29-51,56-75,113-135
Sequence
Target Sequence 
>C. ELEGANS:182609_AT
taccattttgactctcactgatcaggctcatttctttgcgaactcaactcttatcggaat
ccctcttctcctcatattcgtgtatcctgacgaaaaaccaagcgatgaatcgtttttcat
ttattttcctatttttggtggaataacacttttcgatcgttcattggagggtattccgtg
ttactacgtactgaagcttctcttccttttatttttcttcatgccaccttacactgtgtg
ccagataatcgctaatggtttatttattgaaaaagatgttgaaaattcgaataaatctcg
aagggattctattgcaaaaagtcattcaatgagaactgcaatctctgagggtccttctcc
aaaatgtgatgtagcaacagacacaactcaaattacatttaccccatcaccattgccaat
tccatctgaacctaaaagttccgatataaaagtgacagttattgaagaatattacaaaga
ggaagaacttctttctccaaatggatccgttattgatcgagttattactggaccattccg
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCATTTTGACTCTCACTGATCAG 658 649 150 Antisense
TGATCAGGCTCATTTCTTTGCGAAC 522 565 168 Antisense
GAACTCAACTCTTATCGGAATCCCT 458 349 189 Antisense
TTCTCCTCATATTCGTGTATCCTGA 94 693 215 Antisense
GGGTATTCCGTGTTACTACGTACTG 167 497 318 Antisense
GTACTGAAGCTTCTCTTCCTTTTAT 622 459 337 Antisense
ATCTCTGAGGGTCCTTCTCCAAAAT 321 33 490 Antisense
TCAAATTACATTTACCCCATCACCA 166 629 537 Antisense
ACCATTGCCAATTCCATCTGAACCT 433 85 558 Antisense
AGAACTTCTTTCTCCAAATGGATCC 167 71 633 Antisense
GAGTTATTACTGGACCATTCCGCAA 544 397 668 Antisense
Sequence Source Affymetrix Proprietary Database