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[182607_at]

Description C49G7.9 /REP_DB=WormBase Gene ID /WP=CE08867 /TR=O16219 /GB=AAK18903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 8.7
(-3)
A 		10.8
(-2.8)
A 		14.3
(-2.5)
A 		78.1
(3)
A 		69
B 8.6
(-0.6)
A 		20.3
(3)
A 		1
(-3)
A 		4.4
(-1.9)
A 		19
C 19
(-2.4)
A 		2.7
(-2.9)
A 		1.1
(-3)
A 		170.4
(3)
A 		169
avr 12.1
(-2.5) 		11.3
(-2.6) 		5.5
(-3) 		84.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 9.7
(-0.5)
A 		5.6
(-1.9)
A 		19.8
(3)
A 		3.2
(-2.7)
A 		9.6
(-0.5)
A 		2.3
(-3)
A 		18
B 5.9
(-2)
A 		3.2
(-2.6)
A 		30.1
(3)
A 		8.7
(-1.4)
A 		5.2
(-2.2)
A 		1.1
(-3)
A 		29
C 4.6
(1.8)
A 		5.6
(3)
A 		5
(2.3)
A 		2.3
(-1)
A 		3.5
(0.5)
A 		0.6
(-3)
A 		5
avr 6.7
(-1.1) 		4.8
(-1.8) 		18.3
(3) 		4.7
(-1.8) 		6.1
(-1.3) 		1.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 3.2
(-2.4)
A 		2.3
(-3)
A 		3.7
(-2.1)
A 		11.4
(3)
A 		9
B 2.7
(0.1)
A 		5
(3)
A 		0.2
(-3)
A 		0.9
(-2.1)
A 		5
C 6.3
(-1.7)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		28.7
(3)
A 		28
avr 4.1
(-1.7) 		2.7
(-2.4) 		1.4
(-3) 		13.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.8
(-1.1)
A 		2
(-0.7)
A 		4.3
(3)
A 		0.8
(-2.7)
A 		2.9
(0.7)
A 		0.6
(-3)
A 		4
B 2
(-1.6)
A 		1.1
(-2.4)
A 		7.3
(3)
A 		2.3
(-1.3)
A 		2.1
(-1.5)
A 		0.4
(-3)
A 		7
C 1.7
(3)
A 		1.7
(3)
A 		1.3
(1.4)
A 		0.5
(-1.8)
A 		1.1
(0.6)
A 		0.2
(-3)
A 		2
avr 1.8
(-0.8) 		1.6
(-1.2) 		4.3
(3) 		1.2
(-1.8) 		2
(-0.5) 		0.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15188
Sequence Type Exemplar sequence
Representative Public ID C49G7.9 NCBI
Target Description C49G7.9 /REP_DB=WormBase Gene ID /WP=CE08867 /TR=O16219 /GB=AAK18903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C49G7.9
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49G7.9 C49G7.9 /REP_DB=WormBase Gene ID /WP=CE08867 /TR=O16219 /GB=AAK18903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:182607_AT
tcaaaataaatttcccttccctgcatctccctgccgggtctctcccgcatggccgagtgc
aaaaacgtcatttttttgagaaaatgcagcaatttgcgatttctgaaagaaaatttcctg
aaaaatacgtttttcaaaaaatttacctcaaaaagtgccaaactgaccgacttatggacg
aaaaaccatcaaaaatcgctaatttgcacaccaaaaaaaagggggggggggggaaatgca
attttcgatttcacactaaagagcccacttctatagcaatttttgagtttcactcaaaat
atctcggctcaatgagctccaatctttctgaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAATAAATTTCCCTTCCCTGCA 167 629 575 Antisense
GCATGGCCGAGTGCAAAAACGTCAT 479 309 621 Antisense
GCAGCAATTTGCGATTTCTGAAAGA 680 311 660 Antisense
GTGCCAAACTGACCGACTTATGGAC 504 477 729 Antisense
AAAAATCGCTAATTTGCACACCAAA 592 129 765 Antisense
AATGCAATTTTCGATTTCACACTAA 378 165 809 Antisense
GATTTCACACTAAAGAGCCCACTTC 561 427 821 Antisense
GAGCCCACTTCTATAGCAATTTTTG 194 385 835 Antisense
TATAGCAATTTTTGAGTTTCACTCA 578 659 846 Antisense
TTTCACTCAAAATATCTCGGCTCAA 123 673 862 Antisense
AATGAGCTCCAATCTTTCTGAAAAC 347 165 885 Antisense
Sequence Source Affymetrix Proprietary Database