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[182606_at]

Description W05B10.3 /REP_DB=WormBase Gene ID /WP=CE06546 /TR=Q23172 /GB=CAA98964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 12.9
(-3)
A 		16.3
(-2.4)
A 		16
(-2.4)
A 		44.6
(3)
A 		32
B 42.5
(3)
A 		15.2
(-2.4)
A 		15.9
(-2.2)
A 		11.9
(-3)
A 		31
C 8.8
(-2.4)
A 		4.3
(-3)
A 		27.1
(0.2)
A 		47
(3)
A 		43
avr 21.4
(-0.5) 		11.9
(-3) 		19.7
(-0.9) 		34.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 26.4
(-1.8)
A 		15
(-3)
A 		44.3
(0.1)
A 		45.3
(0.2)
A 		71.1
(3)
M 		38.9
(-0.4)
A 		56
B 10
(-1.9)
A 		10.8
(-1.8)
A 		21.4
(-0.6)
A 		1.3
(-3)
A 		50.8
(3)
P 		35.5
(1.1)
A 		50
C 3.8
(-3)
A 		11.5
(-2.4)
A 		4.3
(-3)
A 		3.7
(-3)
A 		79.8
(3)
P 		28.5
(-1)
A 		76
avr 13.4
(-2.9) 		12.4
(-3) 		23.3
(-1.8) 		16.8
(-2.5) 		67.2
(3) 		34.3
(-0.6) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.7
(-0.6)
A 		3.5
(-3)
A 		4.2
(-1.6)
A 		6.5
(3)
A 		3
B 13.6
(3)
A 		3.8
(-2.3)
A 		3.7
(-2.4)
A 		2.5
(-3)
A 		11
C 2.9
(-1.8)
A 		1.2
(-3)
A 		9.4
(3)
A 		7.9
(1.9)
A 		8
avr 7.1
(3) 		2.8
(-3) 		5.8
(1.2) 		5.6
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.9
(-3)
A 		5.3
(-2.9)
A 		9.6
(-1.3)
A 		11.5
(-0.6)
A 		21.4
(3)
M 		9.5
(-1.3)
A 		17
B 3.5
(-2.1)
A 		3.6
(-2.1)
A 		5.2
(-1.6)
A 		0.4
(-3)
A 		20.7
(3)
P 		13.3
(0.8)
A 		20
C 1.4
(-2.8)
A 		3.5
(-2.3)
A 		1.1
(-2.9)
A 		0.7
(-3)
A 		25.8
(3)
P 		9.6
(-0.9)
A 		25
avr 3.3
(-3) 		4.1
(-2.8) 		5.3
(-2.4) 		4.2
(-2.7) 		22.6
(3) 		10.8
(-0.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14385
Sequence Type Exemplar sequence
Representative Public ID W05B10.3 NCBI
Target Description W05B10.3 /REP_DB=WormBase Gene ID /WP=CE06546 /TR=Q23172 /GB=CAA98964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073764 NCBI Caenorhabditis elegans W05B10.3 (W05B10.3) mRNA, complete cds. 11/11 None
W05B10.3 ENSEMBL cdna:known chromosome:CEL140:V:12663894:12664249:-1 gene:W05B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12663893-12664237(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05B10.3
Entrez Gene 179735 Entrez gene
SwissProt Q23172 EMBL-EBI
WormBase CE06546 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98964 Hypothetical protein W05B10.3 [Caenorhabditis elegans] ref|NP_506165.1| W05B10.3 [Caenorhabditis elegans] 2.0E-54
blast CAE63961 Hypothetical protein CBG08549 [Caenorhabditis briggsae] 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:182606_AT
gaagctcaacctgttttttgttatttgtatctttactgtctcaaaaactactgctcaatt
cgagaatataaaaccttgtgtgatttgcgatgatcattggtttattgtcccaaccagttg
gttaaatatgtctaagtatttgcgaggaggttgcaatcgtctcccgaaagctttaatttg
gccgtgtcgagacctcgttgactcaatgaatctttgggatcaatactcgactctttatcc
acatattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCAACCTGTTTTTTGTTATT 85 343 15 Antisense
GTTATTTGTATCTTTACTGTCTCAA 674 447 34 Antisense
GTCTCAAAAACTACTGCTCAATTCG 343 469 52 Antisense
AACCTTGTGTGATTTGCGATGATCA 307 147 86 Antisense
GCGATGATCATTGGTTTATTGTCCC 223 291 101 Antisense
GCGAGGAGGTTGCAATCGTCTCCCG 283 291 156 Antisense
ATCGTCTCCCGAAAGCTTTAATTTG 614 35 170 Antisense
TTAATTTGGCCGTGTCGAGACCTCG 428 191 187 Antisense
GTCGAGACCTCGTTGACTCAATGAA 103 475 200 Antisense
CTTTGGGATCAATACTCGACTCTTT 121 221 226 Antisense
ACTCGACTCTTTATCCACATATTGT 449 99 239 Antisense
Sequence Source Affymetrix Proprietary Database