[Home] | [Total List]

[182604_at]

Description F40E3.2 /REP_DB=WormBase Gene ID /WP=CE10160 /TR=O01549 /GB=AAC24293.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 26      4grp_high_8_8 > 60      6grp_highest_nonorm > 97      6grp_total > 78      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 508
1 2 3 4 range
A 833
(0.3)
P 		868.9
(0.9)
P 		1008.7
(3)
P 		614.6
(-3)
P 		394
B 904.1
(0)
P 		811.7
(-2.4)
P 		1021.1
(3)
P 		786.6
(-3)
P 		235
C 863.8
(1.9)
P 		876.8
(2.1)
P 		940.4
(3)
P 		512.8
(-3)
P 		428
avr 867
(0.9) 		852.5
(0.7) 		990.1
(3) 		638
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 915
1 2 3 4 5 6 range
A 760.8
(-3)
P 		846.2
(-2.2)
P 		799.3
(-2.7)
P 		812.7
(-2.5)
P 		928.6
(-1.5)
P 		1427.7
(3)
P 		667
B 851.4
(-2.4)
P 		893.2
(-1.9)
P 		861.6
(-2.3)
P 		808.4
(-3)
P 		1184.4
(2)
P 		1263.2
(3)
P 		455
C 791.9
(-1.7)
P 		887
(-1)
P 		962.3
(-0.5)
P 		586.3
(-3)
P 		958.6
(-0.6)
P 		1500.8
(3)
P 		915
avr 801.4
(-2.4) 		875.5
(-1.7) 		874.4
(-1.7) 		735.8
(-3) 		1023.9
(-0.4) 		1397.2
(3) 		661
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 303.3
(3)
P 		188.6
(-0.2)
P 		263.7
(1.9)
P 		90
(-3)
P 		213
B 288.3
(3)
P 		200.5
(-1.4)
P 		236.6
(0.4)
P 		167.6
(-3)
P 		121
C 285.9
(2)
P 		252.1
(1.1)
P 		327.8
(3)
P 		86.5
(-3)
P 		241
avr 292.5
(3) 		213.7
(0.3) 		276
(2.4) 		114.7
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 140.3
(-3)
P 		301
(1.7)
P 		174.1
(-2)
P 		206.1
(-1.1)
P 		280.2
(1)
P 		347.6
(3)
P 		207
B 296.3
(-1.1)
P 		297.3
(-1.1)
P 		209.2
(-3)
P 		214.1
(-2.9)
P 		481.2
(3)
P 		471.1
(2.8)
P 		272
C 293.5
(-0.3)
P 		270.6
(-0.6)
P 		244.9
(-1)
P 		117.9
(-3)
P 		310.2
(0)
P 		502.4
(3)
P 		385
avr 243.4
(-1.5) 		289.6
(-0.5) 		209.4
(-2.3) 		179.4
(-3) 		357.2
(1.1) 		440.4
(3) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.328
Sequence Type Exemplar sequence
Representative Public ID F40E3.2 NCBI
Target Description F40E3.2 /REP_DB=WormBase Gene ID /WP=CE10160 /TR=O01549 /GB=AAC24293.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058617 NCBI Caenorhabditis elegans F40E3.2 (F40E3.2) mRNA, complete cds. 11/11 None
SNAP00000025933 ENSEMBL cdna:SNAP chromosome:CEL140:I:2642741:2643704:1 11/11 None
GENEFINDER00000025937 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2642741:2643704:1 11/11 None
F40E3.2 ENSEMBL cdna:known chromosome:CEL140:I:2642741:2643704:1 gene:F40E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2642740-2643704(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40E3.2
Entrez Gene 185532 Entrez gene
SwissProt O01549 EMBL-EBI
WormBase CE34307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24293 Hypothetical protein F40E3.2 [Caenorhabditis elegans] ref|NP_491018.2| F40E3.2 [Caenorhabditis elegans] 1.0E-142
blast AAC24293 Hypothetical protein F40E3.2 [Caenorhabditis elegans] ref|NP_491018.2| F40E3.2 [Caenorhabditis elegans] 1.0E-128
blast CAE60508 Hypothetical protein CBG04127 [Caenorhabditis briggsae] 2.0E-91
blast CAE60508 Hypothetical protein CBG04127 [Caenorhabditis briggsae] 2.0E-82
blast NP_740816 Cysteinyl tRNA Synthetase family member (crs-2) [Caenorhabditis elegans] gb|AAM54171.1| Cysteinyl trna synthetase protein 2, isoform b [Caenorhabditis elegans] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182604_AT
tcgaccgtcgtcaaggatagatcagttcagttcagacctctgccgggagtcttgaaagct
gtcaatgagaatttgctgcattggcagggatggaatgcagtcatccaagacgatcgcctc
acatatgtgaatgtgaatggagatgcaccgaatgaagtgagagcaagtgagaccgagaga
acattgggacttctcaagaatgtgttgatgtatgtttttgtggcgacgaagcctcaatcg
aaacatccaggagttgctcaagaagatctgatgtcttatatggaagcttcaatgtcaaca
cactctgatcggaaactttccctggatcatatggaattcctgaagaaattaatcgctcca
aacgctcgttccgagttcatcaaaaagggatatctcgcatttacgaaatctgtgaacgag
aacgacgaagaagtgttccgatacgaatggggaccggctgctcgtcaaactgtcgaccca
cttgcactcgttcaaaccttccaacaattgacaggaatgaaaccggaaatgctgaaagag
caaactgaaagagccaatgaattgaaggctgagcaagtggctgctgttactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACCGTCGTCAAGGATAGATCAG 345 597 244 Antisense
GATCAGTTCAGTTCAGACCTCTGCC 66 421 263 Antisense
GACCTCTGCCGGGAGTCTTGAAAGC 94 383 278 Antisense
GTGGCGACGAAGCCTCAATCGAAAC 636 489 463 Antisense
AACACACTCTGATCGGAAACTTTCC 564 135 540 Antisense
GGAAACTTTCCCTGGATCATATGGA 482 527 554 Antisense
GAAATTAATCGCTCCAAACGCTCGT 22 361 588 Antisense
CAAACGCTCGTTCCGAGTTCATCAA 614 189 602 Antisense
ATACGAATGGGGACCGGCTGCTCGT 302 21 684 Antisense
CACTCGTTCAAACCTTCCAACAATT 591 195 728 Antisense
TGAGCAAGTGGCTGCTGTTACTCGG 410 569 813 Antisense
Sequence Source Affymetrix Proprietary Database