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[182602_s_at]

Description B0511.7 /REP_DB=WormBase Gene ID /WP=CE17346 /TR=O61817 /GB=AAC17655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 256.1
(-1.7)
P 		245.1
(-3)
P 		297.4
(3)
P 		261.4
(-1.1)
P 		52
B 223.1
(-3)
P 		246.8
(-0.8)
P 		288.8
(3)
P 		277.6
(2)
P 		66
C 257.2
(1.7)
P 		216.5
(-3)
P 		249.1
(0.7)
P 		268.8
(3)
P 		52
avr 245.5
(-1.7) 		236.1
(-3) 		278.4
(3) 		269.3
(1.7) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 218.8
(-3)
P 		242.7
(-2.5)
P 		294
(-1.3)
P 		292.7
(-1.3)
P 		343.1
(-0.2)
P 		480.7
(3)
P 		262
B 212.1
(-3)
P 		210.1
(-3)
P 		278.7
(-1.9)
P 		276.4
(-2)
P 		429.9
(0.4)
P 		599
(3)
P 		389
C 240.7
(-3)
P 		244.9
(-2.9)
P 		243.2
(-2.9)
P 		242
(-3)
P 		367.8
(0.1)
P 		488.8
(3)
P 		248
avr 223.9
(-3) 		232.6
(-2.8) 		272
(-2) 		270.4
(-2.1) 		380.3
(0.1) 		522.8
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 93.3
(3)
P 		53.2
(-1.4)
P 		77.7
(1.3)
P 		38.3
(-3)
P 		55
B 71.1
(3)
P 		60.9
(-2.1)
P 		66.9
(0.9)
P 		59.2
(-3)
P 		12
C 85.1
(2.8)
P 		62.3
(-0.5)
P 		86.8
(3)
P 		45.3
(-3)
P 		42
avr 83.2
(3) 		58.8
(-1.1) 		77.1
(2) 		47.6
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 40.3
(-3)
P 		86.3
(0.6)
P 		64
(-1.1)
P 		74.2
(-0.3)
P 		103.5
(1.9)
P 		117
(3)
P 		77
B 73.8
(-2.8)
P 		69.9
(-2.9)
P 		67.7
(-3)
P 		73.2
(-2.8)
P 		174.7
(1.1)
P 		223.4
(3)
P 		156
C 89.2
(-0.9)
P 		74.7
(-1.6)
P 		61.9
(-2.3)
P 		48.7
(-3)
P 		119
(0.7)
P 		163.6
(3)
P 		115
avr 67.8
(-2.8) 		77
(-2.3) 		64.5
(-3) 		65.4
(-2.9) 		132.4
(0.9) 		168
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182602_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.528
Sequence Type Exemplar sequence
Representative Public ID B0511.7 NCBI
Target Description B0511.7 /REP_DB=WormBase Gene ID /WP=CE17346 /TR=O61817 /GB=AAC17655.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060380(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060380 NCBI Caenorhabditis elegans B0511.7 (B0511.7) mRNA, complete cds. 9/11 None
SNAP00000031155 ENSEMBL cdna:SNAP chromosome:CEL140:I:10639867:10641268:-1 9/11 None
GENEFINDER00000031175 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10639867:10641268:-1 9/11 None
B0511.7 ENSEMBL cdna:known chromosome:CEL140:I:10639867:10641271:-1 gene:B0511.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10639797-10641199(-) 89.63 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.7
Entrez Gene 172955 Entrez gene
SwissProt O61817 EMBL-EBI
WormBase CE34246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605468_AT similar to protein phosphatase 1 regulatory inhibitor subunit 8 isoform alpha cfa
CANINE_2:CFA.1785.1.S1_AT similar to protein phosphatase 1 regulatory inhibitor subunit 8 isoform alpha cfa
CANINE_2:CFAAFFX.18658.1.S1_AT similar to protein phosphatase 1 regulatory inhibitor subunit 8 isoform alpha cfa
DROSOPHILA_2:1627539_AT Nuclear inhibitor of Protein phosphatase 1 dm
DROSGENOME1:141507_AT Nuclear inhibitor of Protein phosphatase 1 dm
CHICKEN:GGA.3224.1.S1_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 gga
CHICKEN:GGAAFFX.12030.1.S1_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 gga
CHICKEN:GGAAFFX.462.1.S1_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 gga
HG-U133_PLUS_2:207830_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
HG-U133A:207830_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
HG-FOCUS:207830_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
HG-U133A_2:207830_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
HUGENEFL:U14575_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
U133_X3P:G4506014_3P_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
U133_X3P:G4506014_3P_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
HG-U95AV2:37705_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 hs
MOUSE430A_2:1435821_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MOE430A:1435821_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MOUSE430_2:1435821_S_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MOUSE430A_2:1424554_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MOE430A:1424554_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MOUSE430_2:1424554_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
MG-U74BV2:115416_AT protein phosphatase 1, regulatory (inhibitor) subunit 8 mm
RAE230A:1373437_AT Protein phosphatase 1, regulatory (inhibitor) subunit 8 (predicted) rn
RAT230_2:1373437_AT Protein phosphatase 1, regulatory (inhibitor) subunit 8 (predicted) rn
RG-U34C:RC_AA818973_AT Protein phosphatase 1, regulatory (inhibitor) subunit 8 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC17655 Hypothetical protein B0511.7 [Caenorhabditis elegans] ref|NP_492781.2| B0511.7 [Caenorhabditis elegans] 1.0E-175
blast CAE67055 Hypothetical protein CBG12463 [Caenorhabditis briggsae] 1.0E-157
blast NP_957494 hypothetical protein LOC394175 [Danio rerio] gb|AAH55258.1| Similar to protein phosphatase 1, regulatory (inhibitor) subunit 8 [Danio rerio] 6.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 6.4E-13
Sequence
Target Sequence 
>C. ELEGANS:182602_S_AT
ttcggagtcacatctgttggaaattaacgtttatttcattatcatttttccgacacggaa
ctttaggtaaaattcaagatttttggctgaaattggctaatttcaagttttttgaacagc
ttttgagaagttttattataaaattacaccaaacttcctacaacactgctcaaaatcgtc
gtattccacaacttccgatatctgtcgaagaagctcgacgaaagaaacgaccacgtggaa
atgttgctttccttgaagaagaagaagttatcaatccggaagatgttgatccatcagttg
gacgattccgaaatcttgtgacaactgcaattatatcaacaaatccgaataaacgaccag
gagatccaaaaagatcggaaccaccgagaaagattgtccgcccgggtcgtgaattgatgt
ctgcaccgctttcttcaacttttggaccaatggctttgaatgctgcaccagatctcgaat
tatatgggaaattgcttcccgagccaggacatcatcaatatgttacatcgactgcaactg
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGAGTCACATCTGTTGGAAATT 268 695 470 Antisense
TTCATTATCATTTTTCCGACACGGA 238 689 504 Antisense
AAACTTCCTACAACACTGCTCAAAA 539 127 620 Antisense
CAAAATCGTCGTATTCCACAACTTC 140 189 640 Antisense
TCCACAACTTCCGATATCTGTCGAA 158 589 654 Antisense
ACGACCACGTGGAAATGTTGCTTTC 291 93 696 Antisense
GGACGATTCCGAAATCTTGTGACAA 47 525 769 Antisense
GCCCGGGTCGTGAATTGATGTCTGC 612 285 869 Antisense
GGCTTTGAATGCTGCACCAGATCTC 163 539 921 Antisense
CTTCCCGAGCCAGGACATCATCAAT 371 219 964 Antisense
ATATGTTACATCGACTGCAACTGAA 494 19 987 Antisense
Sequence Source Affymetrix Proprietary Database