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[182601_at]

Description F28H7.11 /REP_DB=WormBase Gene ID /WP=CE15926 /TR=O17857 /GB=CAA96642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 04      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 41.9
(-0.5)
A 		25.2
(-1.6)
A 		4.6
(-3)
A 		93.2
(3)
A 		89
B 41.2
(0.2)
A 		6.4
(-3)
A 		31.7
(-0.7)
A 		71.2
(3)
A 		65
C 36.3
(-1.2)
A 		36.1
(-1.3)
A 		14.7
(-3)
A 		88.5
(3)
M 		74
avr 39.8
(-1) 		22.6
(-2.5) 		17
(-3) 		84.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 63.4
(3)
A 		32.6
(-0.1)
A 		18.7
(-1.5)
A 		53.7
(2)
A 		41.6
(0.8)
A 		3.2
(-3)
A 		60
B 20.8
(-0.1)
A 		7.9
(-2.6)
A 		30.5
(1.7)
A 		37.1
(3)
A 		14.3
(-1.4)
A 		6
(-3)
A 		31
C 5.1
(-2.9)
A 		28.3
(0.3)
A 		4.3
(-3)
A 		14.8
(-1.6)
A 		7.6
(-2.5)
A 		48.2
(3)
A 		44
avr 29.8
(1.1) 		22.9
(-1.2) 		17.8
(-3) 		35.2
(3) 		21.2
(-1.8) 		19.1
(-2.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.2
(3)
A 		5.5
(-1.2)
A 		1.2
(-3)
A 		13.6
(2.3)
A 		14
B 13.1
(2.1)
A 		1.6
(-3)
A 		7.4
(-0.4)
A 		15.2
(3)
A 		14
C 12
(1.2)
A 		10.4
(0.2)
A 		5.1
(-3)
A 		14.9
(3)
M 		10
avr 13.4
(2.3) 		5.8
(-2.3) 		4.6
(-3) 		14.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.7
(2.1)
A 		11.6
(2.1)
A 		4.1
(-1.5)
A 		13.6
(3)
A 		12.6
(2.5)
A 		0.8
(-3)
A 		13
B 7.2
(0.9)
A 		2.6
(-2.8)
A 		7.4
(1.1)
A 		9.8
(3)
A 		5.8
(-0.2)
A 		2.3
(-3)
A 		8
C 1.9
(-2.7)
A 		8.6
(-0)
A 		1.1
(-3)
A 		3
(-2.2)
A 		2.5
(-2.4)
A 		16.1
(3)
A 		15
avr 6.9
(0.5) 		7.6
(1.4) 		4.2
(-3) 		8.8
(3) 		7
(0.7) 		6.4
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12659
Sequence Type Exemplar sequence
Representative Public ID F28H7.11 NCBI
Target Description F28H7.11 /REP_DB=WormBase Gene ID /WP=CE15926 /TR=O17857 /GB=CAA96642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073339 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-21) (srj-21) mRNA, complete cds. 11/11 None
F28H7.11 ENSEMBL cdna:known chromosome:CEL140:V:10747227:10749054:1 gene:F28H7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10747226-10749054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srj-21
Ensembl F28H7.11
Entrez Gene 185102 Entrez gene
SwissProt O17857 EMBL-EBI
WormBase CE15926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96642 Hypothetical protein F28H7.11 [Caenorhabditis elegans] ref|NP_505740.1| Serpentine Receptor, class J family member (srj-21) [Caenorhabditis elegans] 0.0
blast CAE65499 Hypothetical protein CBG10469 [Caenorhabditis briggsae] 1.0E-117
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 5.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505740.1 7 5-27,44-66,91-113,126-148,200-222,248-270,285-307
F28H7.11 7 5-27,44-66,91-113,126-148,200-222,248-270,285-307
Sequence
Target Sequence 
>C. ELEGANS:182601_AT
tactgtcttgggcttatgtcactttggacatttatagctggcttcctatctagaaaaaat
agagttgaaagactgtcgtacattcaagaatcattcaaagattattttggacgtgatcct
cttgagattaacataattattgtacaatataaagaagcaacggaagattttatcgaagca
tcttggataggaatcgggctactctcagttgtttcaattgcttctttactttttattgtg
cttattgcatatttcacattagctgaactcactaaaagagcaggaatcatgagtgaaagt
actaaaagacaacagaatcaactgatgaaagcactaattgttcaaacaataactcccaca
attgcatgtttttctccgtgcttcttctcgtggtatcttcctgtttttggaatagatggc
ggagagttgctgcaactcatttcagcagttgagatgtcagcgtttccatttttcgaccct
ctctccacaattttggtgctcccagtactacgacgtcaaatcaaaaaagtttttggatat
caagatccttcgactacaaacattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTCTTGGGCTTATGTCACTTT 530 645 424 Antisense
GACATTTATAGCTGGCTTCCTATCT 379 371 450 Antisense
ATTTTGGACGTGATCCTCTTGAGAT 186 15 527 Antisense
GATAGGAATCGGGCTACTCTCAGTT 375 425 609 Antisense
TGTTTCAATTGCTTCTTTACTTTTT 134 561 633 Antisense
TAACTCCCACAATTGCATGTTTTTC 486 639 773 Antisense
TCTCGTGGTATCTTCCTGTTTTTGG 519 611 809 Antisense
ATGTCAGCGTTTCCATTTTTCGACC 321 49 877 Antisense
CTCTCCACAATTTTGGTGCTCCCAG 339 231 904 Antisense
GCTCCCAGTACTACGACGTCAAATC 397 299 921 Antisense
AAGATCCTTCGACTACAAACATTAT 123 155 965 Antisense
Sequence Source Affymetrix Proprietary Database