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[182600_at]

Description F02D10.6 /REP_DB=WormBase Gene ID /WP=CE03141 /TR=Q19116 /GB=CAA91937.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      4grp_high_8_8 > 08      6grp_total > 68      4grp_total > 44      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 98.6
(2.9)
P 		68.1
(-2.9)
P 		99.2
(3)
P 		67.8
(-3)
A 		31
B 62.9
(0.3)
M 		87.8
(3)
P 		74.5
(1.6)
P 		32
(-3)
A 		56
C 62.2
(0.2)
A 		82.1
(2.2)
A 		29.6
(-3)
A 		90.2
(3)
P 		61
avr 74.6
(1.2) 		79.3
(3) 		67.8
(-1.3) 		63.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 89.2
(-0.3)
P 		63.3
(-2)
P 		73.2
(-1.3)
P 		47.2
(-3)
M 		61
(-2.1)
P 		139.3
(3)
P 		92
B 85.4
(0.2)
P 		55.6
(-2.8)
P 		53.8
(-3)
P 		78.7
(-0.5)
P 		76.9
(-0.6)
P 		112.5
(3)
P 		59
C 57.6
(-3)
A 		67.3
(-2.3)
P 		72.4
(-1.9)
A 		85.9
(-0.8)
A 		77.8
(-1.5)
P 		136.1
(3)
P 		79
avr 77.4
(-1.6) 		62.1
(-3) 		66.5
(-2.6) 		70.6
(-2.2) 		71.9
(-2.1) 		129.3
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 35.9
(3)
P 		14.8
(-1.9)
P 		25.9
(0.7)
P 		9.9
(-3)
A 		26
B 20.1
(2.4)
M 		21.7
(3)
P 		17.3
(1.2)
P 		6.8
(-3)
A 		15
C 20.6
(1.6)
A 		23.6
(3)
A 		10.3
(-3)
A 		15.2
(-0.8)
P 		13
avr 25.5
(3) 		20
(0.8) 		17.8
(-0.1) 		10.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 16.4
(-1.8)
P 		22.5
(-0.1)
P 		16
(-1.9)
P 		12
(-3)
M 		18.4
(-1.2)
P 		33.9
(3)
P 		22
B 29.7
(0.4)
P 		18.5
(-1.9)
P 		13.1
(-3)
P 		20.9
(-1.4)
P 		31.2
(0.8)
P 		42
(3)
P 		29
C 21.3
(-2.1)
A 		20.5
(-2.3)
P 		18.4
(-2.8)
A 		17.3
(-3)
A 		25.2
(-1.3)
P 		45.5
(3)
P 		28
avr 22.5
(-1.4) 		20.5
(-1.9) 		15.8
(-3) 		16.7
(-2.8) 		24.9
(-0.8) 		40.5
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17392
Sequence Type Exemplar sequence
Representative Public ID F02D10.6 NCBI
Target Description F02D10.6 /REP_DB=WormBase Gene ID /WP=CE03141 /TR=Q19116 /GB=CAA91937.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077841 NCBI Caenorhabditis elegans F02D10.6 (F02D10.6) mRNA, complete cds. 11/11 None
SNAP00000039141 ENSEMBL cdna:SNAP chromosome:CEL140:X:13449577:13450634:-1 11/11 None
GENEFINDER00000039147 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13449577:13451592:-1 11/11 None
F02D10.6 ENSEMBL cdna:known chromosome:CEL140:X:13449577:13451592:-1 gene:F02D10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13449576-13451592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02D10.6
Entrez Gene 184085 Entrez gene
SwissProt Q19116 EMBL-EBI
WormBase CE03141 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91937 Hypothetical protein F02D10.6 [Caenorhabditis elegans] ref|NP_510242.1| F02D10.6 [Caenorhabditis elegans] 1.0E-113
blast CAA91937 Hypothetical protein F02D10.6 [Caenorhabditis elegans] ref|NP_510242.1| F02D10.6 [Caenorhabditis elegans] 1.0E-103
blast CAB03977 Hypothetical protein C49F5.3 [Caenorhabditis elegans] ref|NP_510005.1| C49F5.3 [Caenorhabditis elegans] 1.0E-33
blast CAB03977 Hypothetical protein C49F5.3 [Caenorhabditis elegans] ref|NP_510005.1| C49F5.3 [Caenorhabditis elegans] 2.0E-31
blast CAE56088 Hypothetical protein CBG23672 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510242.1 3 21-39,49-71,84-106
F02D10.6 3 21-39,49-71,84-106
SNAP00000039141 3 21-43,53-75,88-110
GENEFINDER00000039147 3 21-39,49-71,84-106
Sequence
Target Sequence 
>C. ELEGANS:182600_AT
tcttcttcctcactgtcgaaatggttatcgtctggattagctacttgttcattaatcccg
ttgaaaatttcatttacaatatttggatgttccatcttctgatcgccttgtttttatctg
tgttttgcaaaactctcaactttgccatctatcgtgccggattcagacttctccacatgt
gctacaatgtctacattctctatacgttgggatatatgatcgttccgttccacatctctc
tgtactttttgtttgagtttacctacacggtttatggaatttcgtacaaacagatggatt
accccactacgtggattgtgatttcactccaaaagtgtggatcccgtggcactgggccta
tgcacaactcccccatttacccattcaccagtgttgcttgcgagacgattcgaaaggagt
gtatccttaacgaagaaaagcttgacgattcggatggttattactctgctctcgaagatg
ttcttttcccagtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTTCCTCACTGTCGAAATGGT 428 615 77 Antisense
AGCTACTTGTTCATTAATCCCGTTG 334 79 115 Antisense
TTGGATGTTCCATCTTCTGATCGCC 386 709 159 Antisense
ATCGCCTTGTTTTTATCTGTGTTTT 45 39 178 Antisense
CTCTCAACTTTGCCATCTATCGTGC 500 227 209 Antisense
TTCAGACTTCTCCACATGTGCTACA 222 687 238 Antisense
GATATATGATCGTTCCGTTCCACAT 690 425 287 Antisense
TCCACATCTCTCTGTACTTTTTGTT 79 589 305 Antisense
CAGATGGATTACCCCACTACGTGGA 549 195 367 Antisense
CATTCACCAGTGTTGCTTGCGAGAC 349 215 458 Antisense
CGAAGATGTTCTTTTCCCAGTCGTT 122 253 549 Antisense
Sequence Source Affymetrix Proprietary Database