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[182599_s_at]

Description W02G9.4 /REP_DB=WormBase Gene ID /WP=CE18317 /TR=O61901 /GB=AAC17682.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      6grp_highest_nonorm > 54      6grp_total > 63      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1569
1 2 3 4 range
A 1497.1
(2.7)
P 		1584.5
(3)
P 		1488.3
(2.6)
P 		85.2
(-3)
A 		1499
B 1619.3
(2.9)
P 		1336.8
(1.8)
P 		1651.6
(3)
P 		82.8
(-3)
A 		1569
C 1542.7
(3)
P 		1313.4
(2)
P 		1207.2
(1.6)
P 		116.3
(-3)
A 		1426
avr 1553
(3) 		1411.6
(2.4) 		1449
(2.6) 		94.8
(-3) 		1458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1159
1 2 3 4 5 6 range
A 955.9
(-3)
P 		1012.6
(-2.7)
P 		1987.6
(3)
P 		1731.6
(1.5)
P 		1373.6
(-0.6)
P 		1062.9
(-2.4)
P 		1032
B 829
(-3)
P 		972.2
(-2.1)
P 		1796.2
(3)
P 		1583.6
(1.7)
P 		1235.9
(-0.5)
P 		1209.2
(-0.6)
P 		967
C 841.4
(-3)
P 		1047.4
(-1.7)
P 		1733.5
(2.8)
P 		1760.3
(3)
P 		1332.7
(0.2)
P 		1304.7
(0)
P 		919
avr 875.4
(-3) 		1010.7
(-2.2) 		1839.1
(3) 		1691.8
(2.1) 		1314.1
(-0.3) 		1192.3
(-1) 		964
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 545.1
(3)
P 		344
(0.7)
P 		389.1
(1.2)
P 		12.5
(-3)
A 		533
B 516.4
(3)
P 		330.2
(0.8)
P 		382.7
(1.4)
P 		17.7
(-3)
A 		499
C 510.7
(3)
P 		377.6
(1.4)
P 		420.7
(1.9)
P 		19.6
(-3)
A 		491
avr 524.1
(3) 		350.6
(0.9) 		397.5
(1.5) 		16.6
(-3) 		508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 176.2
(-3)
P 		360.1
(1.2)
P 		432.9
(2.9)
P 		439.2
(3)
P 		414.5
(2.4)
P 		258.8
(-1.1)
P 		263
B 288.4
(-3)
P 		323.6
(-2)
P 		436.2
(1.1)
P 		419.4
(0.7)
P 		502.1
(3)
P 		450.9
(1.6)
P 		214
C 311.9
(-3)
P 		319.6
(-2.6)
P 		441.2
(3)
P 		354
(-1)
P 		431.2
(2.5)
P 		436.7
(2.8)
P 		129
avr 258.8
(-3) 		334.4
(-0.6) 		436.8
(2.6) 		404.2
(1.6) 		449.3
(3) 		382.1
(0.9) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182599_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15898
Sequence Type Exemplar sequence
Representative Public ID W02G9.4 NCBI
Target Description W02G9.4 /REP_DB=WormBase Gene ID /WP=CE18317 /TR=O61901 /GB=AAC17682.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071326 NCBI Caenorhabditis elegans W02G9.4 (W02G9.4) mRNA, complete cds. 11/11 A 
SNAP00000022901 ENSEMBL cdna:SNAP chromosome:CEL140:V:2666753:2671053:1 11/11 None
GENEFINDER00000022907 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2666753:2670013:1 11/11 None
W02G9.4 ENSEMBL cdna:known chromosome:CEL140:V:2666753:2670043:1 gene:W02G9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2666752-2670013(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02G9.4
Entrez Gene 178731 Entrez gene
SwissProt O61901 EMBL-EBI
WormBase CE18317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17682 Hypothetical protein W02G9.4 [Caenorhabditis elegans] ref|NP_503727.1| W02G9.4 [Caenorhabditis elegans] 1.0E-164
blast AAC17682 Hypothetical protein W02G9.4 [Caenorhabditis elegans] ref|NP_503727.1| W02G9.4 [Caenorhabditis elegans] 1.0E-158
blast CAE62531 Hypothetical protein CBG06640 [Caenorhabditis briggsae] 6.0E-93
blast CAE62531 Hypothetical protein CBG06640 [Caenorhabditis briggsae] 1.0E-92
blast XP_780621 PREDICTED: similar to cubilin, partial [Strongylocentrotus purpuratus] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 9.3E-9
Pfam IPR000859 EMBL-EBI CUB 6.1E-24
Sequence
Target Sequence 
>C. ELEGANS:182599_S_AT
ttccgcaccgcttattggacattattccggaaagaatatgccagctccaataacatcgac
gagcaacactttgtacctgtgcttctcctcagacttggtcaccaatttctcgggattctc
cggtctgtatacctcatttgtctcgaacaacttcaagcgcggagtactaccacagtccct
gacaacggattcagtggcgattcgtcgtgacaagaacattctcgactggctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGCACCGCTTATTGGACATTAT 597 697 585 Antisense
ATGCCAGCTCCAATAACATCGACGA 392 41 622 Antisense
GACGAGCAACACTTTGTACCTGTGC 609 379 642 Antisense
ACTTGGTCACCAATTTCTCGGGATT 375 103 677 Antisense
TTCTCGGGATTCTCCGGTCTGTATA 619 691 691 Antisense
GTCTGTATACCTCATTTGTCTCGAA 560 471 707 Antisense
TGTCTCGAACAACTTCAAGCGCGGA 610 555 723 Antisense
CAAGCGCGGAGTACTACCACAGTCC 46 185 738 Antisense
ACCACAGTCCCTGACAACGGATTCA 673 83 753 Antisense
GATTCAGTGGCGATTCGTCGTGACA 512 431 772 Antisense
CAAGAACATTCTCGACTGGCTCAAA 268 185 795 Antisense
Sequence Source Affymetrix Proprietary Database