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[182598_at]

Description W02G9.4 /REP_DB=WormBase Gene ID /WP=CE18317 /TR=O61901 /GB=AAC17682.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 43      6grp_total > 62      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1576
1 2 3 4 range
A 1662.3
(3)
P 		1610
(2.8)
P 		1580.3
(2.7)
P 		123.6
(-3)
P 		1539
B 1661.7
(3)
P 		1467.2
(2.3)
P 		1475.9
(2.3)
P 		86.4
(-3)
P 		1575
C 1562
(3)
P 		1566.6
(3)
P 		1332.8
(2)
P 		122.7
(-3)
P 		1444
avr 1628.7
(3) 		1547.9
(2.7) 		1463
(2.3) 		110.9
(-3) 		1518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 890.1
(-2)
P 		1023.2
(-1.1)
P 		1568.2
(2.8)
P 		1594.3
(3)
P 		1062.6
(-0.8)
P 		756.9
(-3)
P 		837
B 836.9
(-2.5)
P 		951
(-1.6)
P 		1501.6
(3)
P 		1235.5
(0.8)
P 		1203.4
(0.5)
P 		779.8
(-3)
P 		722
C 897.7
(-2.6)
P 		919.8
(-2.4)
P 		1531.6
(3)
P 		1502.9
(2.7)
P 		1195
(0)
P 		857.7
(-3)
P 		674
avr 874.9
(-2.4) 		964.7
(-1.6) 		1533.8
(3) 		1444.2
(2.3) 		1153.7
(-0.1) 		798.1
(-3) 		736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 605.3
(3)
P 		349.5
(0.4)
P 		413.1
(1)
P 		18.1
(-3)
P 		587
B 529.9
(3)
P 		362.4
(1)
P 		342
(0.8)
P 		18.4
(-3)
P 		512
C 517.1
(3)
P 		450.4
(2.2)
P 		464.5
(2.4)
P 		20.7
(-3)
P 		496
avr 550.8
(3) 		387.4
(1.2) 		406.5
(1.4) 		19.1
(-3) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 164.1
(-3)
P 		363.9
(2)
P 		341.5
(1.4)
P 		404.3
(3)
P 		320.7
(0.9)
P 		184.3
(-2.5)
P 		240
B 291.2
(-3)
P 		316.5
(-2.2)
P 		364.6
(-0.8)
P 		327.2
(-1.9)
P 		488.9
(3)
P 		290.8
(-3)
P 		198
C 332.7
(-0.1)
P 		280.7
(-3)
P 		389.8
(3)
P 		302.2
(-1.8)
P 		386.7
(2.8)
P 		287.1
(-2.6)
P 		109
avr 262.7
(-2.6) 		320.4
(-0.3) 		365.3
(1.6) 		344.6
(0.8) 		398.8
(3) 		254.1
(-3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15898
Sequence Type Exemplar sequence
Representative Public ID W02G9.4 NCBI
Target Description W02G9.4 /REP_DB=WormBase Gene ID /WP=CE18317 /TR=O61901 /GB=AAC17682.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071326 NCBI Caenorhabditis elegans W02G9.4 (W02G9.4) mRNA, complete cds. 11/11 A 
SNAP00000022901 ENSEMBL cdna:SNAP chromosome:CEL140:V:2666753:2671053:1 11/11 None
GENEFINDER00000022907 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2666753:2670013:1 11/11 None
W02G9.4 ENSEMBL cdna:known chromosome:CEL140:V:2666753:2670043:1 gene:W02G9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2666752-2670013(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02G9.4
Entrez Gene 178731 Entrez gene
SwissProt O61901 EMBL-EBI
WormBase CE18317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17682 Hypothetical protein W02G9.4 [Caenorhabditis elegans] ref|NP_503727.1| W02G9.4 [Caenorhabditis elegans] 1.0E-164
blast AAC17682 Hypothetical protein W02G9.4 [Caenorhabditis elegans] ref|NP_503727.1| W02G9.4 [Caenorhabditis elegans] 1.0E-158
blast CAE62531 Hypothetical protein CBG06640 [Caenorhabditis briggsae] 6.0E-93
blast CAE62531 Hypothetical protein CBG06640 [Caenorhabditis briggsae] 1.0E-92
blast XP_780621 PREDICTED: similar to cubilin, partial [Strongylocentrotus purpuratus] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 9.3E-9
Pfam IPR000859 EMBL-EBI CUB 6.1E-24
Sequence
Target Sequence 
>C. ELEGANS:182598_AT
ggcgacaaaaccggattcgcgctcgacattcaagcctctcaagtgacgcttgtctttacc
agcgacttgaccaacacgttccgcggattcctgatccgatacgacagtgtgccggtagga
tccgtgtacatgccaaccaacttgtgctcgagcatcctgcacaacagtgaattcgatatt
atcacctcgccaaatttcccgtacaactacccggataacatatcatgcgcgttcctgatc
aaagtctctgctgatcgtttgatctccttccaatttgtcgccttcaacacagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGACAAAACCGGATTCGCGCTCG 547 539 250 Antisense
GACATTCAAGCCTCTCAAGTGACGC 342 371 274 Antisense
GTGACGCTTGTCTTTACCAGCGACT 179 483 292 Antisense
GTTCCGCGGATTCCTGATCCGATAC 610 441 327 Antisense
ATCCGATACGACAGTGTGCCGGTAG 253 35 343 Antisense
GGTAGGATCCGTGTACATGCCAACC 69 505 363 Antisense
TGCCAACCAACTTGTGCTCGAGCAT 614 585 380 Antisense
CGATATTATCACCTCGCCAAATTTC 702 247 423 Antisense
TCATGCGCGTTCCTGATCAAAGTCT 29 623 472 Antisense
GTCTCTGCTGATCGTTTGATCTCCT 284 471 493 Antisense
CCAATTTGTCGCCTTCAACACAGAG 291 277 519 Antisense
Sequence Source Affymetrix Proprietary Database