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[182597_at]

Description T07E3.4 /REP_DB=WormBase Gene ID /WP=CE01385 /TR=Q22310 /GB=AAA21083.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 92      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 64      6grp_total > 83      4grp_total > 09      6grp_highest_sub > 05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2835
1 2 3 4 range
A 368.4
(-3)
P 		726.9
(-2.2)
P 		825
(-2)
P 		3203.8
(3)
P 		2835
B 412.8
(-3)
P 		753.7
(-2.2)
P 		877.2
(-1.9)
P 		2926.3
(3)
P 		2514
C 411.2
(-3)
P 		797
(-2.1)
P 		877.2
(-1.9)
P 		2996.2
(3)
P 		2585
avr 397.5
(-3) 		759.2
(-2.2) 		859.8
(-2) 		3042.1
(3) 		2645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 674
1 2 3 4 5 6 range
A 792.7
(-3)
P 		972.1
(0.2)
P 		791.7
(-3)
P 		1135
(3)
P 		1108.9
(2.5)
P 		888.2
(-1.3)
P 		343
B 640.2
(-3)
P 		910.5
(-0.6)
P 		946.7
(-0.3)
P 		1025.9
(0.4)
P 		1314.6
(3)
P 		903.2
(-0.7)
P 		674
C 678.6
(-3)
P 		844.4
(-1)
P 		914
(-0.1)
P 		1116.9
(2.4)
P 		1166
(3)
P 		983.5
(0.8)
P 		487
avr 703.8
(-3) 		909
(-0.5) 		884.1
(-0.8) 		1092.6
(1.7) 		1196.5
(3) 		925
(-0.3) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 134.1
(-3)
P 		157.8
(-2.6)
P 		215.7
(-1.5)
P 		469
(3)
P 		335
B 131.6
(-3)
P 		186.1
(-2.3)
P 		203.3
(-2.1)
P 		623.6
(3)
P 		492
C 136.1
(-3)
P 		229.1
(-1.5)
P 		305.7
(-0.2)
P 		505.2
(3)
P 		369
avr 133.9
(-3) 		191
(-2.1) 		241.6
(-1.4) 		532.6
(3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 146.1
(-3)
P 		345.7
(3)
P 		172.4
(-2.2)
P 		287.9
(1.3)
P 		334.6
(2.7)
P 		216.3
(-0.9)
P 		200
B 222.8
(-3)
P 		303.1
(-1.5)
P 		229.9
(-2.9)
P 		271.7
(-2.1)
P 		534.1
(3)
P 		336.8
(-0.8)
P 		311
C 251.5
(-1.9)
P 		257.7
(-1.7)
P 		232.6
(-2.7)
P 		224.6
(-3)
P 		377.3
(3)
P 		329.2
(1.1)
P 		153
avr 206.8
(-3) 		302.2
(-0.3) 		211.6
(-2.9) 		261.4
(-1.4) 		415.3
(3) 		294.1
(-0.5) 		209
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6376
Sequence Type Exemplar sequence
Representative Public ID T07E3.4 NCBI
Target Description T07E3.4 /REP_DB=WormBase Gene ID /WP=CE01385 /TR=Q22310 /GB=AAA21083.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066100(11), NM_181968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066100 NCBI Caenorhabditis elegans T07E3.4a (T07E3.4) mRNA, complete cds. 11/11 None
NM_181968 NCBI Caenorhabditis elegans T07E3.4b (T07E3.4) mRNA, complete cds. 11/11 None
SNAP00000020881 ENSEMBL cdna:SNAP chromosome:CEL140:III:6897972:6900336:1 11/11 None
GENEFINDER00000020894 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6897972:6900336:1 11/11 None
T07E3.4a.2 ENSEMBL cdna:known chromosome:CEL140:III:6897947:6900528:1 gene:T07E3.4 11/11 None
T07E3.4a.1 ENSEMBL cdna:known chromosome:CEL140:III:6897948:6900528:1 gene:T07E3.4 11/11 None
T07E3.4b ENSEMBL cdna:known chromosome:CEL140:III:6897948:6900336:1 gene:T07E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6897970-6900335(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07E3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21083 Hypothetical protein T07E3.4a [Caenorhabditis elegans] ref|NP_498501.1| T07E3.4a [Caenorhabditis elegans] 0.0
blast AAN65298 Hypothetical protein T07E3.4b [Caenorhabditis elegans] ref|NP_871697.1| T07E3.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:182597_AT
ttgatttctcattatccaactgcctctcccttcatcgattccttgcccctgtcgcaaaaa
cacttgaaatcttcgaaatcactcaatgtactggaatgcgagcagattcggtaactgacg
agcatttggctcaactggatgctccaacggttcgtagaatttgcattgatggagtacgat
tcgcgtcgaatgccacacgtaatctggatattggagacggagcattgagacattttgcaa
gacttggagcatttccaacaatgattctggatcgatgtgcagttacaactaatacagtat
gtgattacacaaaagaatggttcgagcagtgtaatgaatcggaaaagcagttgagaagtc
aagtatgcacagtcaagaggtgtccaaaagttaaaggatctcaatttgaatccgaatgcc
ttcgacgtggacttcgatgcaaaaatcgccgtggctcgggctcattgacattgtataatg
tgcaggaggaaaatacaaaacgcgaatttacaattgctctggcagctcttgaagacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATTTCTCATTATCCAACTGCCT 166 705 674 Antisense
GCATTTGGCTCAACTGGATGCTCCA 316 309 795 Antisense
GGATGCTCCAACGGTTCGTAGAATT 263 513 810 Antisense
GCATTGATGGAGTACGATTCGCGTC 390 307 836 Antisense
ATTCGCGTCGAATGCCACACGTAAT 215 9 852 Antisense
GAATCCGAATGCCTTCGACGTGGAC 372 327 1081 Antisense
GCCTTCGACGTGGACTTCGATGCAA 604 279 1091 Antisense
GATGCAAAAATCGCCGTGGCTCGGG 415 413 1109 Antisense
TGGCTCGGGCTCATTGACATTGTAT 118 545 1125 Antisense
AACGCGAATTTACAATTGCTCTGGC 289 145 1172 Antisense
TTGCTCTGGCAGCTCTTGAAGACAA 254 701 1187 Antisense
Sequence Source Affymetrix Proprietary Database