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[182595_at]

Description C14E2.3 /REP_DB=WormBase Gene ID /WP=CE06830 /TR=Q17984 /GB=AAA85748.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 32.6
(-3)
A 		52.3
(0.2)
A 		49.7
(-0.2)
A 		69
(3)
A 		36
B 45.3
(-1)
A 		68.9
(3)
A 		51.2
(-0)
A 		33.7
(-3)
A 		35
C 43.8
(-3)
A 		63
(-1)
A 		48.1
(-2.6)
A 		102.3
(3)
A 		59
avr 40.6
(-3) 		61.4
(1.5) 		49.7
(-1) 		68.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 45.5
(-0)
A 		46.4
(0)
A 		44.8
(-0.1)
A 		13.2
(-2.5)
A 		85.6
(3)
A 		6.3
(-3)
A 		79
B 31.3
(0.1)
A 		36.3
(1.9)
A 		22.5
(-3)
A 		39.3
(3)
A 		38.3
(2.6)
A 		38.7
(2.8)
A 		17
C 22.4
(0.9)
A 		10.3
(-1.8)
A 		31.5
(3)
A 		4.9
(-3)
A 		5.3
(-2.9)
A 		16.6
(-0.4)
A 		27
avr 33.1
(0.5) 		31
(-0) 		32.9
(0.4) 		19.1
(-3) 		43.1
(3) 		20.5
(-2.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.9
(0.7)
A 		11.3
(-0.5)
A 		13
(3)
A 		10.1
(-3)
A 		3
B 14.4
(1.4)
A 		17
(3)
A 		11.9
(-0.1)
A 		7.2
(-3)
A 		10
C 14.5
(-3)
A 		18.1
(3)
A 		16.8
(0.8)
A 		17.2
(1.5)
A 		4
avr 13.6
(0.1) 		15.5
(3) 		13.9
(0.6) 		11.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.4
(-1.3)
A 		16.5
(0.7)
A 		9.8
(-1)
A 		3.4
(-2.5)
A 		25.8
(3)
A 		1.5
(-3)
A 		24
B 10.9
(0.2)
A 		12.1
(0.9)
A 		5.5
(-3)
A 		10.4
(-0.1)
A 		15.6
(3)
A 		14.4
(2.3)
A 		10
C 8.3
(3)
A 		3.1
(-1.3)
A 		8
(2.8)
A 		1
(-3)
A 		1.7
(-2.4)
A 		5.6
(0.8)
A 		7
avr 9.2
(-0.3) 		10.6
(0.6) 		7.8
(-1.2) 		4.9
(-3) 		14.4
(3) 		7.2
(-1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18207
Sequence Type Exemplar sequence
Representative Public ID C14E2.3 NCBI
Target Description C14E2.3 /REP_DB=WormBase Gene ID /WP=CE06830 /TR=Q17984 /GB=AAA85748.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075931 NCBI Caenorhabditis elegans C14E2.3 (C14E2.3) mRNA, complete cds. 11/11 None
SNAP00000021824 ENSEMBL cdna:SNAP chromosome:CEL140:X:1810680:1811530:-1 11/11 None
GENEFINDER00000021833 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1810680:1813397:-1 10/11 None
C14E2.3 ENSEMBL cdna:known chromosome:CEL140:X:1810680:1811530:-1 gene:C14E2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1810679-1811530(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14E2.3
Entrez Gene 182615 Entrez gene
SwissProt Q17984 EMBL-EBI
WormBase CE06830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85748 Hypothetical protein C14E2.3 [Caenorhabditis elegans] ref|NP_508332.1| C14E2.3 [Caenorhabditis elegans] 1.0E-102
blast AAA85748 Hypothetical protein C14E2.3 [Caenorhabditis elegans] ref|NP_508332.1| C14E2.3 [Caenorhabditis elegans] 2.0E-98
blast T27459 hypothetical protein Y87G2A.g - Caenorhabditis elegans 1.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021833 3 21-38,43-65,86-108
Sequence
Target Sequence 
>C. ELEGANS:182595_AT
ttctttcaaggtcaatgccactcccagccaaatccggccatctgcgagagctgtcgaatt
aacacgagccccattctccatactccattcgactgcaatcaggatccacgaaagaagcag
atcagagtgatcgttccaacaagaattgccccgccgcctccaatcaaagaagccagttgt
cccaatctgccacaaattcggattcacgatccactggtcttctcggtcatcagtgagcag
actgaacaagcttctacttttccaaccgatatcccagctgcagaaactgctccaagccag
aaattgaattccgaatgcggcattgagaagaagcagccaacagtcacagctccggtcaca
atagattctagctcaactgccgagcaagagccaccacagaaaacccaatcgacttctgtc
ttgccaaatgttagcccatttccaacgcctcccccggtgccgccaaagccgacacatttg
atggccagaatggatagtcagtgctccggccaacaggcaaagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTCAAGGTCAATGCCACTCCC 435 687 19 Antisense
GGCCATCTGCGAGAGCTGTCGAATT 351 543 54 Antisense
ATCGTTCCAACAAGAATTGCCCCGC 409 3 148 Antisense
GTCCCAATCTGCCACAAATTCGGAT 374 475 197 Antisense
ATTCGGATTCACGATCCACTGGTCT 395 9 214 Antisense
GTCTTCTCGGTCATCAGTGAGCAGA 318 469 235 Antisense
TGAACAAGCTTCTACTTTTCCAACC 289 573 261 Antisense
AACCGATATCCCAGCTGCAGAAACT 264 147 282 Antisense
TCACAGCTCCGGTCACAATAGATTC 611 627 362 Antisense
AAAACCCAATCGACTTCTGTCTTGC 240 131 418 Antisense
AGTGCTCCGGCCAACAGGCAAAGAC 460 59 518 Antisense
Sequence Source Affymetrix Proprietary Database