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[182594_s_at] G-protein coupled receptor, srh family

Description F08E10.4 /REP_DB=WormBase Gene ID /WP=CE18574 /TR=Q9XXP1 /GB=CAA16503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 10      6grp_cgc > 52      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 1.4
(-3)
A 		14.7
(-0.1)
A 		8.8
(-1.4)
A 		28.5
(3)
A 		27
B 6.4
(-2)
A 		6.5
(-1.9)
A 		2.9
(-3)
A 		22.9
(3)
A 		20
C 1.8
(-3)
A 		2.9
(-2.9)
A 		1.2
(-3)
A 		74
(3)
P 		73
avr 3.2
(-3) 		8
(-2.3) 		4.3
(-2.8) 		41.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(-1.9)
A 		1.2
(-3)
A 		1.4
(-2.6)
A 		3.6
(2.3)
A 		3.9
(3)
A 		1.3
(-2.8)
A 		3
B 2.9
(1)
A 		3.9
(3)
A 		1.9
(-1)
A 		1.2
(-2.4)
A 		1.5
(-1.8)
A 		0.9
(-3)
A 		3
C 1.2
(-3)
A 		2.5
(3)
A 		1.5
(-1.6)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.9
(0.2)
A 		1
avr 1.9
(-0.3) 		2.5
(3) 		1.6
(-1.9) 		2
(0.3) 		2.2
(1.4) 		1.4
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.5
(-3)
A 		3.2
(1.4)
A 		2.3
(-0.1)
A 		4.2
(3)
A 		4
B 2
(-1.1)
A 		1.6
(-1.7)
A 		0.7
(-3)
A 		4.9
(3)
A 		4
C 0.6
(-2.9)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		12.5
(3)
P 		12
avr 1
(-3) 		1.9
(-2.1) 		1.1
(-2.9) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		0.9
(1)
A 		1.2
(3)
A 		0.3
(-3)
A 		1
B 1
(1.2)
A 		1.3
(3)
A 		0.5
(-1.8)
A 		0.3
(-3)
A 		0.6
(-1.2)
A 		0.3
(-3)
A 		1
C 0.4
(-1)
A 		0.8
(3)
A 		0.4
(-1)
A 		0.2
(-3)
A 		0.4
(-1)
A 		0.6
(1)
A 		1
avr 0.6
(-0) 		0.8
(3) 		0.4
(-3) 		0.5
(-1.5) 		0.7
(1.5) 		0.4
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182594_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12582
Sequence Type Exemplar sequence
Representative Public ID F08E10.4 NCBI
Target Description F08E10.4 /REP_DB=WormBase Gene ID /WP=CE18574 /TR=Q9XXP1 /GB=CAA16503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074960 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-109) (srh-109) mRNA, complete cds. 11/11 A 
SNAP00000010310 ENSEMBL cdna:SNAP chromosome:CEL140:V:17221830:17223022:-1 11/11 None
T19C9.4 ENSEMBL cdna:known chromosome:CEL140:V:17221830:17223022:-1 gene:T19C9.4 11/11 A 
F08E10.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17480909:17481962:-1 gene:F08E10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039052 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17480908-17481788(-) 98.37 100.0
chrV:17221829-17222848(-) 90.07 91.7
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-109
Ensembl T19C9.4
F08E10.4
Entrez Gene 188599 Entrez gene
SwissProt O45795 EMBL-EBI
WormBase CE33187 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07489 Hypothetical protein T19C9.4 [Caenorhabditis elegans] ref|NP_507361.2| Serpentine Receptor, class H family member (srh-109) [Caenorhabditis elegans] 0.0
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-136
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507361.2 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
T19C9.4 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
SNAP00000010310 7 31-53,66-88,108-130,150-172,194-216,223-242,257-279
Sequence
Target Sequence 
>C. ELEGANS:182594_S_AT
acgttattctttttcgagccaatgatggcgtttgcgaccgttggtgtgtttaactggttg
ggtgtcccatttgtttatcagggagtttttggagcagcaatggctagtggtgttgccggc
tcatacgtcttcctattcgaaagccgtagcagctctctaattggaaatcgatttcgaata
cataaacaatcatctagttttttatattacacctatttttttgctccgtacatagcggta
ctagttgccatagctaacgttgccgaggaatcggatgctgcaaagttgcgggctctggaa
gtttacccttgccctacaccagaatttttatgttcacagtctgcgtattcgtgggaaacc
caaacttcaattccactttttgttataattgctcctgctatggcggttttgttagcatcg
tggacgggaacttatcgtcaagaatggatgaatttgtctaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTTATTCTTTTTCGAGCCAATGA 206 93 91 Antisense
AGCCAATGATGGCGTTTGCGACCGT 227 85 107 Antisense
AATGATGGCGTTTGCGACCGTTGGT 281 165 111 Antisense
TATATTACACCTATTTTTTTGCTCC 190 661 293 Antisense
GGATGCTGCAAAGTTGCGGGCTCTG 606 513 363 Antisense
GCAAAGTTGCGGGCTCTGGAAGTTT 366 315 370 Antisense
CCTGCTATGGCGGTTTTGTTAGCAT 158 267 484 Antisense
TTGTTAGCATCGTGGACGGGAACTT 546 653 499 Antisense
GCATCGTGGACGGGAACTTATCGTC 709 305 505 Antisense
GTGGACGGGAACTTATCGTCAAGAA 96 489 510 Antisense
TCAAGAATGGATGAATTTGTCTAAC 280 625 528 Antisense
Sequence Source Affymetrix Proprietary Database