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[182593_at]

Description F08E10.4 /REP_DB=WormBase Gene ID /WP=CE18574 /TR=Q9XXP1 /GB=CAA16503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 19      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 2.1
(-3)
A 		44.9
(-0.4)
A 		39.1
(-0.8)
A 		102.7
(3)
P 		101
B 38.3
(-0.1)
A 		38.2
(-0.1)
A 		19.2
(-3)
A 		58.6
(3)
A 		39
C 36.9
(-0.7)
A 		30.4
(-1.1)
A 		2.4
(-3)
A 		90.6
(3)
M 		88
avr 25.8
(-2.5) 		37.8
(-1.3) 		20.2
(-3) 		84
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 51.2
(2.4)
A 		22.6
(-2.2)
A 		55.1
(3)
A 		21
(-2.5)
A 		18.7
(-2.9)
A 		17.9
(-3)
A 		37
B 4.2
(-3)
A 		21.8
(-0.2)
A 		21.2
(-0.3)
A 		36.9
(2.1)
A 		42.5
(3)
A 		32.3
(1.4)
A 		38
C 2.9
(-3)
A 		72.3
(3)
A 		34
(-0.3)
A 		12.4
(-2.2)
A 		12.6
(-2.2)
A 		18.1
(-1.7)
A 		69
avr 19.4
(-3) 		38.9
(3) 		36.8
(2.4) 		23.4
(-1.8) 		24.6
(-1.4) 		22.8
(-2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.8
(-3)
A 		9.7
(0.8)
A 		10.2
(1)
A 		15
(3)
P 		14
B 12.2
(2.8)
A 		9.4
(0.7)
A 		4.4
(-3)
A 		12.5
(3)
A 		8
C 12.2
(1.7)
A 		8.7
(0.2)
A 		0.9
(-3)
A 		15.3
(3)
M 		14
avr 8.4
(-0.9) 		9.3
(-0.3) 		5.2
(-3) 		14.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.4
(0.9)
A 		8
(-0.2)
A 		12
(3)
A 		5.3
(-2.3)
A 		5.6
(-2.1)
A 		4.4
(-3)
A 		8
B 1.5
(-3)
A 		7.3
(-0.8)
A 		5.2
(-1.6)
A 		9.8
(0.2)
A 		17.3
(3)
A 		12
(1)
A 		16
C 1.1
(-3)
A 		22.1
(3)
A 		8.6
(-0.9)
A 		2.5
(-2.6)
A 		4.1
(-2.1)
A 		6.1
(-1.6)
A 		21
avr 4
(-3) 		12.5
(3) 		8.6
(0.2) 		5.9
(-1.7) 		9
(0.5) 		7.5
(-0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12582
Sequence Type Exemplar sequence
Representative Public ID F08E10.4 NCBI
Target Description F08E10.4 /REP_DB=WormBase Gene ID /WP=CE18574 /TR=Q9XXP1 /GB=CAA16503.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074960
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F08E10.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17480909:17481962:-1 gene:F08E10.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074960 1/11 Cross Hyb Matching Probes A 
SNAP00000010310 1/11 Cross Hyb Matching Probes None
T19C9.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17480908-17481788(-) 98.37 100.0
chrV:17221829-17222848(-) 90.07 91.7
Public Domain and Genome References
Ensembl F08E10.4
Sequence
Target Sequence 
>C. ELEGANS:182593_AT
gtgtttaactggttgggtgtcccatttgtttatcagggagtttttggagcagcaatggct
agtggtgttgccggctcatacgtcttcctattcgaaagccgtagcagctctctaattgga
aatcgatttcgaatacataaacaatcatctagttttttatattacacctatttttttgct
ccgtacatagcggtactagttgccatagctaacgttgccgaggaatcggatgctgcaaag
ttgcgggctctggaagtttacccttgccctacaccagaatttttatgttcacagtctgcg
tattcgtgggaaacccaaacttcaattccactttttgttataattgctcctgctatggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTTAACTGGTTGGGTGTCCCAT 481 467 136 Antisense
TTATCAGGGAGTTTTTGGAGCAGCA 155 679 165 Antisense
AATGGCTAGTGGTGTTGCCGGCTCA 335 161 189 Antisense
GAAAGCCGTAGCAGCTCTCTAATTG 526 359 229 Antisense
AGCTCTCTAATTGGAAATCGATTTC 416 79 241 Antisense
AGTTGCCATAGCTAACGTTGCCGAG 318 63 333 Antisense
CGTTGCCGAGGAATCGGATGCTGCA 689 247 348 Antisense
CCTTGCCCTACACCAGAATTTTTAT 434 269 397 Antisense
GTCTGCGTATTCGTGGGAAACCCAA 275 471 429 Antisense
ACTTTTTGTTATAATTGCTCCTGCT 224 103 465 Antisense
TTGTTATAATTGCTCCTGCTATGGC 155 705 470 Antisense
Sequence Source Affymetrix Proprietary Database