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[182592_at]

Description C34E11.2 /REP_DB=WormBase Gene ID /WP=CE03063 /TR=Q18454 /GB=CAA91752.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.8
(-2.9)
A 		14.8
(-1.2)
A 		5.5
(-3)
A 		35.7
(3)
A 		30
B 4.6
(-3)
A 		16.4
(0.3)
A 		25.8
(3)
A 		12.7
(-0.7)
A 		21
C 5.1
(-3)
A 		20.2
(1.2)
A 		26.7
(3)
A 		5.3
(-2.9)
A 		22
avr 5.2
(-3) 		17.1
(2.1) 		19.3
(3) 		17.9
(2.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 21.2
(-1.8)
A 		14.8
(-2.4)
A 		16.8
(-2.2)
A 		8.8
(-3)
A 		70.6
(3)
A 		13.8
(-2.5)
A 		62
B 6.4
(-2.4)
A 		18.1
(0.7)
A 		6.2
(-2.4)
A 		26.6
(3)
A 		24.3
(2.4)
A 		4.1
(-3)
A 		23
C 10.6
(0.8)
A 		13.7
(3)
A 		8
(-1)
A 		6.8
(-1.9)
A 		9.8
(0.2)
A 		5.2
(-3)
A 		9
avr 12.7
(-1.9) 		15.5
(-1.3) 		10.3
(-2.4) 		14.1
(-1.6) 		34.9
(3) 		7.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.1
(-1.9)
A 		3.2
(-0.2)
A 		1.4
(-3)
A 		5.2
(3)
A 		4
B 1.5
(-3)
A 		4
(0.3)
A 		6
(3)
A 		2.7
(-1.4)
A 		5
C 1.7
(-2.4)
A 		5.8
(0.5)
A 		9.3
(3)
A 		0.9
(-3)
A 		8
avr 1.8
(-3) 		4.3
(0.9) 		5.6
(3) 		2.9
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.9
(-2.5)
A 		5.3
(-2)
A 		3.7
(-2.5)
A 		2.2
(-3)
A 		21.3
(3)
A 		3.4
(-2.6)
A 		19
B 2.2
(-2.5)
A 		6
(0.2)
A 		1.5
(-3)
A 		7
(0.9)
A 		9.9
(3)
A 		1.5
(-3)
A 		8
C 3.9
(2.4)
A 		4.2
(3)
A 		2
(-1.7)
A 		1.4
(-3)
A 		3.2
(0.9)
A 		1.7
(-2.4)
A 		3
avr 3.3
(-2.3) 		5.2
(-1.1) 		2.4
(-2.9) 		3.5
(-2.2) 		11.5
(3) 		2.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16797
Sequence Type Exemplar sequence
Representative Public ID C34E11.2 NCBI
Target Description C34E11.2 /REP_DB=WormBase Gene ID /WP=CE03063 /TR=Q18454 /GB=CAA91752.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077573
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030630 ENSEMBL cdna:SNAP chromosome:CEL140:X:11808815:11812480:-1 None
NM_077573 NCBI Caenorhabditis elegans C34E11.2 (C34E11.2) mRNA, complete cds. None
C34E11.2 ENSEMBL cdna:known chromosome:CEL140:X:11805282:11811385:-1 gene:C34E11.2 None
GENEFINDER00000030635 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11807790:11813941:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030629 5/11 Cross Hyb Matching Probes None
GENEFINDER00000030634 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11806073-11811385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E11.2
Entrez Gene 181359 Entrez gene
SwissProt Q18454 EMBL-EBI
WormBase CE31435 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91752 Hypothetical protein C34E11.2 [Caenorhabditis elegans] ref|NP_509974.2| C34E11.2 [Caenorhabditis elegans] 0.0
blast CAE69422 Hypothetical protein CBG15588 [Caenorhabditis briggsae] 0.0
blast XP_623917 PREDICTED: similar to CG13188-PB, isoform B [Apis mellifera] 1.0E-37
blast EAA04134 ENSANGP00000019058 [Anopheles gambiae str. PEST] ref|XP_308422.2| ENSANGP00000019058 [Anopheles gambiae str. PEST] 9.0E-35
Sequence
Target Sequence 
>C. ELEGANS:182592_AT
agcttttccttaaccatgcctatatttcaggtctccccaatgcttcgctgccatataatc
aaattaacaacgcgtaagtcaattaacacccaaccatatattatagggagtttcacccgc
accgcggcgaggagatggaagtttacttcggtcgaagcccggtccagtccgatcctccac
gcaaccgatcaaacccgttcgtcagcgaactccgtcaggttctcgagaaacgaacgagcg
gattgcgcattgcgcgcaaccactctcaaccagccacagttcatcccaacttgcgacaat
tcggcaacgctcgccaaccccaccacggtgctacccaaccgtacaacaacgtcagcagca
attgcagcagcgggcggaacactccagaacgagcccattcacaacacgtcgcgtcttctt
ctcaccaagcgcctcgaggactccggagaacgcacaaccaacaataccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTTTCCTTAACCATGCCTATAT 514 79 1642 Antisense
CCATGCCTATATTTCAGGTCTCCCC 463 271 1655 Antisense
CCAATGCTTCGCTGCCATATAATCA 277 277 1678 Antisense
ATTATAGGGAGTTTCACCCGCACCG 380 11 1741 Antisense
CCCGCACCGCGGCGAGGAGATGGAA 133 257 1757 Antisense
AACTCCGTCAGGTTCTCGAGAAACG 609 139 1849 Antisense
GAACGAGCGGATTGCGCATTGCGCG 652 347 1873 Antisense
ACAGTTCATCCCAACTTGCGACAAT 588 107 1917 Antisense
TGCGACAATTCGGCAACGCTCGCCA 465 583 1933 Antisense
GCAATTGCAGCAGCGGGCGGAACAC 208 323 1999 Antisense
GAGAACGCACAACCAACAATACCAA 87 393 2087 Antisense
Sequence Source Affymetrix Proprietary Database