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[182591_s_at]

Description F46F6.1B /REP_DB=WormBase Gene ID /WP=CE18698 /TR=Q20473 /GB=CAA21521.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 56      6grp_highest_nonorm > 81      6grp_total > 02      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 341.7
(2.8)
P 		223.4
(-3)
P 		345.6
(3)
P 		281.2
(-0.2)
P 		122
B 321.9
(3)
P 		255.9
(-1.7)
M 		238.2
(-3)
P 		292.8
(0.9)
P 		84
C 337.9
(3)
P 		272.8
(-1.8)
P 		294.4
(-0.2)
P 		256
(-3)
P 		82
avr 333.8
(3) 		250.7
(-3) 		292.7
(0) 		276.7
(-1.1) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 276.2
(0.9)
P 		313.4
(2.8)
P 		201.8
(-3)
P 		317.7
(3)
P 		293.1
(1.7)
P 		250.2
(-0.5)
P 		116
B 224.1
(-0.2)
P 		304.7
(3)
P 		151.3
(-3)
P 		290.6
(2.4)
P 		289.7
(2.4)
P 		165.2
(-2.5)
P 		153
C 381.4
(3)
P 		309.3
(0.7)
P 		281.3
(-0.1)
P 		192
(-2.9)
P 		299.2
(0.4)
P 		189.8
(-3)
P 		192
avr 293.9
(2.2) 		309.1
(3) 		211.5
(-2.5) 		266.8
(0.6) 		294
(2.2) 		201.7
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 124.4
(3)
P 		48.5
(-2.5)
P 		90.3
(0.5)
P 		41.2
(-3)
P 		83
B 102.7
(3)
P 		63.2
(-2)
M 		55.2
(-3)
P 		62.4
(-2.1)
P 		48
C 111.9
(3)
P 		78.4
(0.1)
P 		102.6
(2.2)
P 		43.2
(-3)
P 		69
avr 113
(3) 		63.4
(-1.6) 		82.7
(0.2) 		48.9
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 50.9
(-2.4)
P 		111.5
(3)
P 		43.9
(-3)
P 		80.6
(0.3)
P 		88.4
(0.9)
P 		60.9
(-1.5)
P 		68
B 78
(0.1)
P 		101.4
(1.8)
P 		36.7
(-3)
P 		77
(-0)
P 		117.7
(3)
P 		61.6
(-1.2)
P 		81
C 141.4
(3)
P 		94.4
(0.3)
P 		71.6
(-1.1)
P 		38.6
(-3)
P 		96.8
(0.4)
P 		63.5
(-1.5)
P 		103
avr 90.1
(1.6) 		102.4
(3) 		50.7
(-3) 		65.4
(-1.3) 		101
(2.8) 		62
(-1.7) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182591_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16120
Sequence Type Exemplar sequence
Representative Public ID F46F6.1B NCBI
Target Description F46F6.1B /REP_DB=WormBase Gene ID /WP=CE18698 /TR=Q20473 /GB=CAA21521.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077339(11), NM_077338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077339 NCBI Caenorhabditis elegans F46F6.1b (F46F6.1) mRNA, complete cds. 11/11 None
NM_077338 NCBI Caenorhabditis elegans F46F6.1a (F46F6.1) mRNA, complete cds. 11/11 None
F46F6.1b ENSEMBL cdna:known chromosome:CEL140:X:10373168:10374766:-1 gene:F46F6.1 11/11 A 
F46F6.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:10373530:10377680:-1 gene:F46F6.1 11/11 None
F46F6.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:10373530:10377590:-1 gene:F46F6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10373529-10374766(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46F6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90338 Hypothetical protein F46F6.1a [Caenorhabditis elegans] emb|CAA21522.1| Hypothetical protein F46F6.1a [Caenorhabditis elegans] ref|NP_509739.1| F46F6.1a [Caenorhabditis elegans] 0.0
blast CAE70572 Hypothetical protein CBG17226 [Caenorhabditis briggsae] 0.0
blast CAA21521 Hypothetical protein F46F6.1b [Caenorhabditis elegans] ref|NP_509740.1| F46F6.1b [Caenorhabditis elegans] 4.0E-75
blast XP_397549 PREDICTED: similar to GA15037-PA [Apis mellifera] 6.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 5.1E-26
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 3.4E-80
Pfam IPR005113 EMBL-EBI uDENN domain 1.4E-29
Sequence
Target Sequence 
>C. ELEGANS:182591_S_AT
tgagcagtcgccaatgtcttttgataacctacaatgggatgcaacggtttaaaagtgacg
aaaacgagggcttcccggtggaaacaaggatggacaatgttccagtagccaacctcattg
atttggatgaaccttctacaagttctgcgtctgggcttacatcagtggatgaacagtact
ttcttcgtccctccgaacttgcaactaacaaccgcaagtcgccatctggagcaataggaa
acgtatttgccgacccatttgcgacgtcaccagaaggctcggcgcctccattgccctctc
gacccccaccacctctacatcctcgcatgattcctggctcatcggtccagtcaatctctc
caagtggatcatcagcacctcacctactccattttcaacaaagccatcagtgggcacaag
tcagccaagtaggaagcgtaccatcagcgatgaacccatctgcacccgattggtatgctc
ctccgccgctacctccccgacgacctgcatcagttggcccatcgagcacatcgtcagggc
aaccagcaactgcttttgccactagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCAGTCGCCAATGTCTTTTGAT 56 569 20 Antisense
AATGTTCCAGTAGCCAACCTCATTG 23 163 115 Antisense
GAACCTTCTACAAGTTCTGCGTCTG 483 345 148 Antisense
TCTGCGTCTGGGCTTACATCAGTGG 371 609 163 Antisense
GGATGAACAGTACTTTCTTCGTCCC 677 511 186 Antisense
ATAGGAAACGTATTTGCCGACCCAT 616 1 253 Antisense
CCCATTTGCGACGTCACCAGAAGGC 620 257 273 Antisense
CTCACCTACTCCATTTTCAACAAAG 59 229 398 Antisense
CCATCTGCACCCGATTGGTATGCTC 360 271 475 Antisense
GGCCCATCGAGCACATCGTCAGGGC 400 543 535 Antisense
CAGCAACTGCTTTTGCCACTAGTTC 421 203 563 Antisense
Sequence Source Affymetrix Proprietary Database