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[182590_at] 7TM chemoreceptor, srg family

Description C24B9.7 /REP_DB=WormBase Gene ID /WP=CE17449 /TR=O76435 /GB=AAC19255.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 36      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 30.6
(0.1)
A 		47.8
(3)
A 		43.2
(2.2)
A 		12.5
(-3)
A 		35
B 41.6
(3)
A 		39.3
(2.6)
A 		9.5
(-2.7)
A 		8.1
(-3)
A 		34
C 33.7
(-2.2)
A 		33
(-2.3)
A 		26.4
(-3)
A 		84.1
(3)
A 		58
avr 35.3
(0.9) 		40
(3) 		26.4
(-3) 		34.9
(0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 36.9
(3)
A 		26.7
(1.1)
A 		19.7
(-0.1)
A 		27.6
(1.3)
A 		3.9
(-3)
A 		10.3
(-1.8)
A 		33
B 27.2
(0.2)
A 		44.1
(3)
A 		32.5
(1.1)
A 		7.4
(-3)
A 		22.2
(-0.6)
A 		24.3
(-0.2)
A 		37
C 36.6
(0.5)
A 		61.4
(3)
A 		1.7
(-3)
A 		31.2
(-0)
A 		3.6
(-2.8)
A 		21.9
(-1)
A 		60
avr 33.6
(1.2) 		44.1
(3) 		18
(-1.6) 		22.1
(-0.9) 		9.9
(-3) 		18.8
(-1.4) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.2
(2.9)
A 		10.4
(2.4)
A 		11.3
(3)
A 		1.8
(-3)
A 		10
B 13.3
(3)
A 		9.7
(1.1)
A 		2.2
(-2.7)
A 		1.7
(-3)
A 		12
C 11.2
(-0.6)
A 		9.5
(-2.6)
A 		9.2
(-3)
A 		14.2
(3)
A 		5
avr 11.9
(3) 		9.9
(1) 		7.6
(-1.3) 		5.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.8
(1)
A 		9.5
(3)
A 		4.3
(-0.8)
A 		7
(1.2)
A 		1.2
(-3)
A 		2.5
(-2.1)
A 		8
B 9.5
(0.5)
A 		14.7
(3)
A 		7.9
(-0.2)
A 		2
(-3)
A 		9
(0.3)
A 		9.1
(0.4)
A 		13
C 13.6
(1.3)
A 		18.7
(3)
A 		0.4
(-3)
A 		6.3
(-1.1)
A 		1.2
(-2.7)
A 		7.3
(-0.7)
A 		18
avr 10
(0.5) 		14.3
(3) 		4.2
(-2.8) 		5.1
(-2.3) 		3.8
(-3) 		6.3
(-1.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15023
Sequence Type Exemplar sequence
Representative Public ID C24B9.7 NCBI
Target Description C24B9.7 /REP_DB=WormBase Gene ID /WP=CE17449 /TR=O76435 /GB=AAC19255.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071338 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-60) (srg-60) mRNA, complete cds. 11/11 None
GENEFINDER00000038288 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2717222:2725152:-1 11/11 None
C24B9.15 ENSEMBL cdna:known chromosome:CEL140:V:2721117:2722482:-1 gene:C24B9.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2721116-2725152(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-60
Ensembl C24B9.15
Entrez Gene 182841 Entrez gene
SwissProt Q86B38 EMBL-EBI
WormBase CE33275 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19249 Serpentine receptor, class t protein 27 [Caenorhabditis elegans] ref|NP_503738.1| Serpentine Receptor, class T family member (srt-27) [Caenorhabditis elegans] 0.0
blast AAO26014 Serpentine receptor, class g (gamma) protein 60 [Caenorhabditis elegans] ref|NP_503739.2| Serpentine Receptor, class G (gamma) family member (srg-60) [Caenorhabditis elegans] 1.0E-164
blast AAO26014 Serpentine receptor, class g (gamma) protein 60 [Caenorhabditis elegans] ref|NP_503739.2| Serpentine Receptor, class G (gamma) family member (srg-60) [Caenorhabditis elegans] 1.0E-161
blast CAE62540 Hypothetical protein CBG06649 [Caenorhabditis briggsae] 1.0E-160
blast AAO26015 Serpentine receptor, class g (gamma) protein 59 [Caenorhabditis elegans] ref|NP_872217.1| Serpentine Receptor, class G (gamma) family member (srg-59) [Caenorhabditis elegans] 1.0E-142
blast AAC19258 Serpentine receptor, class g (gamma) protein 61 [Caenorhabditis elegans] ref|NP_503744.2| Serpentine Receptor, class G (gamma) family member (srg-61) [Caenorhabditis elegans] 6.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503739.2 7 24-46,53-75,108-130,137-154,190-212,233-252,267-289
C24B9.15 7 24-46,53-75,108-130,137-154,190-212,233-252,267-289
GENEFINDER00000038288 23 22-44,57-79,118-140,177-195,277-299,306-328,361-383,390-407,443-465,485-502,604-626,639-661,676-698,719-741,768-790,811-833,1007-1029,1042-1064,1079-1101,1122-1144,1199-1221,1242-1263,1273-1295
Sequence
Target Sequence 
>C. ELEGANS:182590_AT
actgcaatgctgagtcttcatcggatacttacagttgtgttcgctgggaaatttgaaagg
ttttgctaccgatggtacccggcaattggaatttccatgtttgtgtatagccatctgcca
aaattattatggcccgggttcacattggaggtgcatattgttaatggaactcttatgaaa
actagattcaacttggtttatgtaaatgcaattaatattaatgcaatattctctgcgata
tatttcattttaatattgacaattgggatcgctacggtggttttggtgacgaaaaagttg
agagctgccaaccttcccaccgatcgaatttccaaaaaattgacccgtttggcactgatc
tactgttttttgtacactggaatattgatgtggagcgtgattacatctatcgactcgaat
tttccatttcttccagcctttattgtcaatcacaattttacgtttctcacgtattcttct
gatattatgactttgtcacttccatatattcttcttgcatttgactccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCAATGCTGAGTCTTCATCGGA 664 97 1333 Antisense
ATGTTTGTGTATAGCCATCTGCCAA 78 49 1429 Antisense
TGGCCCGGGTTCACATTGGAGGTGC 686 429 1462 Antisense
GGATCGCTACGGTGGTTTTGGTGAC 175 485 1598 Antisense
AAAGTTGAGAGCTGCCAACCTTCCC 455 121 1626 Antisense
AATTGACCCGTTTGGCACTGATCTA 113 177 1670 Antisense
GGAGCGTGATTACATCTATCGACTC 325 521 1724 Antisense
CAATCACAATTTTACGTTTCTCACG 577 181 1779 Antisense
GTTTCTCACGTATTCTTCTGATATT 185 451 1794 Antisense
GACTTTGTCACTTCCATATATTCTT 138 373 1821 Antisense
ATATTCTTCTTGCATTTGACTCCAA 176 19 1838 Antisense
Sequence Source Affymetrix Proprietary Database