[Home] | [Total List]

[182589_s_at]

Description Y43F8C.3 /REP_DB=WormBase Gene ID /WP=CE21901 /TR=Q9XWN3 /GB=CAA21618.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 23.2
(-2.7)
A 		7.3
(-3)
A 		11.1
(-2.9)
A 		313.4
(3)
A 		306
B 56
(-1.7)
A 		43.6
(-2.1)
A 		9.9
(-3)
A 		230.4
(3)
P 		221
C 28.9
(-2.6)
A 		20.7
(-2.8)
A 		8.8
(-3)
A 		353
(3)
A 		344
avr 36
(-2.5) 		23.9
(-2.7) 		9.9
(-3) 		298.9
(3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 6.9
(-3)
A 		12.2
(-2.5)
A 		28.3
(-0.9)
A 		8.7
(-2.8)
A 		14.4
(-2.3)
A 		69.3
(3)
A 		62
B 11
(-2.5)
A 		48.4
(1.7)
A 		6.4
(-3)
A 		14.4
(-2.1)
A 		60.5
(3)
A 		12.3
(-2.3)
A 		54
C 46.9
(0)
A 		9.3
(-3)
A 		21.8
(-2)
A 		11
(-2.9)
A 		83.3
(3)
A 		11.9
(-2.8)
A 		74
avr 21.6
(-1.5) 		23.3
(-1.3) 		18.8
(-1.9) 		11.4
(-3) 		52.7
(3) 		31.2
(-0.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 8.5
(-2.1)
A 		1.6
(-3)
A 		2.9
(-2.8)
A 		45.9
(3)
A 		44
B 17.9
(-1)
A 		10.8
(-1.9)
A 		2.3
(-3)
A 		49.1
(3)
P 		47
C 9.6
(-2.3)
A 		5.9
(-2.7)
A 		3.1
(-3)
A 		59.5
(3)
A 		56
avr 12
(-1.9) 		6.1
(-2.6) 		2.8
(-3) 		51.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.3
(-3)
A 		4.3
(-1.8)
A 		6.2
(-1.1)
A 		2.2
(-2.7)
A 		4.4
(-1.8)
A 		16.9
(3)
A 		16
B 3.8
(-2.4)
A 		16.1
(0.8)
A 		1.5
(-3)
A 		3.8
(-2.4)
A 		24.6
(3)
A 		4.6
(-2.2)
A 		23
C 17.4
(0.7)
A 		2.8
(-2.9)
A 		5.6
(-2.2)
A 		2.2
(-3)
A 		27
(3)
A 		4
(-2.6)
A 		25
avr 7.5
(-1.2) 		7.7
(-1.1) 		4.4
(-2.4) 		2.7
(-3) 		18.7
(3) 		8.5
(-0.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182589_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13086
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.3 NCBI
Target Description Y43F8C.3 /REP_DB=WormBase Gene ID /WP=CE21901 /TR=Q9XWN3 /GB=CAA21618.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075402 NCBI Caenorhabditis elegans Y43F8C.3 (Y43F8C.3) mRNA, complete cds. 11/11 None
SNAP00000039608 ENSEMBL cdna:SNAP chromosome:CEL140:V:19614827:19624918:-1 11/11 None
GENEFINDER00000039630 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19617641:19624918:-1 11/11 None
Y43F8C.3 ENSEMBL cdna:known chromosome:CEL140:V:19617441:19625032:-1 gene:Y43F8C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19617440-19624918(-) 98.79 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.3
Entrez Gene 180282 Entrez gene
SwissProt Q9XWN3 EMBL-EBI
WormBase CE21901 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21618 Hypothetical protein Y43F8C.3 [Caenorhabditis elegans] ref|NP_507803.1| Y43F8C.3 [Caenorhabditis elegans] 0.0
blast CAE61735 Hypothetical protein CBG05686 [Caenorhabditis briggsae] 1.0E-168
blast CAE61735 Hypothetical protein CBG05686 [Caenorhabditis briggsae] 1.0E-151
blast CAE72365 Hypothetical protein CBG19516 [Caenorhabditis briggsae] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182589_S_AT
ggaggatgacgacctagacttcagcaaattgcagaagccgcggctgaaaatgccaggctt
gaccaattgcttcctccgctgtgaaggtcagctgatcgaggtgaaccgtgaatttctggc
tcacagctctcagtacttttcggggctcttttcgaaaaacttccgtgaaggctacgagcg
taccgttaacctaacctacgagcatctgcctaccttgaagcttgggctccaggtgctgta
caatcgccggctcccgctgaatgatgtggaaatctcgcgggtgctggattttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGATGACGACCTAGACTTCAGC 286 515 1254 Antisense
GAAGCCGCGGCTGAAAATGCCAGGC 29 345 1287 Antisense
AATGCCAGGCTTGACCAATTGCTTC 650 165 1302 Antisense
GCTTCCTCCGCTGTGAAGGTCAGCT 263 307 1322 Antisense
GGTCAGCTGATCGAGGTGAACCGTG 675 503 1339 Antisense
GAACCGTGAATTTCTGGCTCACAGC 221 347 1356 Antisense
ACAGCTCTCAGTACTTTTCGGGGCT 462 107 1376 Antisense
GTTAACCTAACCTACGAGCATCTGC 545 443 1438 Antisense
CTGCCTACCTTGAAGCTTGGGCTCC 564 235 1459 Antisense
CCGGCTCCCGCTGAATGATGTGGAA 497 265 1500 Antisense
AATCTCGCGGGTGCTGGATTTTGCG 528 169 1524 Antisense
Sequence Source Affymetrix Proprietary Database