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[182588_at]

Description C30E1.2 /REP_DB=WormBase Gene ID /WP=CE08469 /TR=O17336 /GB=AAB71247.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 25.5
(-1.9)
A 		57.1
(0.1)
A 		7.5
(-3)
A 		104.9
(3)
A 		97
B 39.6
(-3)
A 		43.3
(-2)
A 		53.5
(0.6)
A 		62.5
(3)
A 		23
C 44.7
(-1.5)
A 		39.6
(-1.8)
A 		12.4
(-3)
A 		144
(3)
P 		132
avr 36.6
(-2.1) 		46.7
(-1.3) 		24.5
(-3) 		103.8
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 52.3
(2.9)
A 		3.1
(-3)
A 		47
(2.2)
A 		53.5
(3)
A 		39.3
(1.3)
A 		22.6
(-0.7)
A 		50
B 31.5
(-1)
A 		19.4
(-3)
A 		56.5
(3)
A 		42.3
(0.7)
A 		39.7
(0.3)
A 		39.6
(0.3)
A 		37
C 15
(-3)
A 		55.2
(2.9)
A 		30.7
(-0.7)
A 		29.8
(-0.8)
A 		55.7
(3)
A 		29.8
(-0.8)
A 		41
avr 32.9
(-0.8) 		25.9
(-3) 		44.7
(2.9) 		41.9
(2.1) 		44.9
(3) 		30.7
(-1.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.3
(0.3)
A 		12.4
(1.7)
A 		2
(-3)
A 		15.4
(3)
A 		13
B 12.6
(1.4)
A 		10.7
(-3)
A 		12.4
(0.9)
A 		13.3
(3)
A 		3
C 14.8
(0.2)
A 		11.4
(-0.9)
A 		4.3
(-3)
A 		24.3
(3)
P 		20
avr 12.2
(0.1) 		11.5
(-0.2) 		6.2
(-3) 		17.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.6
(1.1)
A 		1.1
(-3)
A 		10.2
(1.4)
A 		13.6
(3)
A 		11.9
(2.2)
A 		5.5
(-0.9)
A 		13
B 10.9
(-0.3)
A 		6.5
(-3)
A 		13.7
(1.5)
A 		11.2
(-0.1)
A 		16.1
(3)
A 		14.7
(2.1)
A 		10
C 5.6
(-3)
A 		16.8
(2.4)
A 		7.8
(-1.9)
A 		6
(-2.8)
A 		18
(3)
A 		10
(-0.9)
A 		12
avr 8.7
(-2.5) 		8.1
(-3) 		10.6
(-0.9) 		10.3
(-1.2) 		15.3
(3) 		10.1
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17832
Sequence Type Exemplar sequence
Representative Public ID C30E1.2 NCBI
Target Description C30E1.2 /REP_DB=WormBase Gene ID /WP=CE08469 /TR=O17336 /GB=AAB71247.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078340 NCBI Caenorhabditis elegans C30E1.2 (C30E1.2) mRNA, complete cds. 11/11 None
C30E1.2 ENSEMBL cdna:known chromosome:CEL140:X:16926877:16927936:1 gene:C30E1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041129 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16926876-16927936(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.2
Entrez Gene 183045 Entrez gene
SwissProt O17336 EMBL-EBI
WormBase CE08469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71247 Hypothetical protein C30E1.2 [Caenorhabditis elegans] ref|NP_510741.1| C30E1.2 [Caenorhabditis elegans] 1.0E-136
blast AAB53817 Hypothetical protein C08A9.3 [Caenorhabditis elegans] ref|NP_510761.1| C08A9.3 [Caenorhabditis elegans] 8.0E-53
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 3.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510741.1 4 47-66,71-93,147-169,184-206
C30E1.2 4 47-66,71-93,147-169,184-206
Sequence
Target Sequence 
>C. ELEGANS:182588_AT
gagtggtgtacctgggtttatcattaaaatcttgtttgctatgctttcatttagttcgac
agcatttttctgtttcaaatactattttcagagaccatctggaattcaagaaaatcagtg
gatagtttctcccttacaaacagtggaatgtgttttgtcagaacaaaataatgtgtaccg
acctctcaaatcaaaattagcactgatgaccgcaactctgccatgtatctctaacagttt
actatatgttgcaatattgctagtggcatcaggacaatgccaaatatatttgtattacta
cattattcaaaaaataagatttgaacgaaaatcattcaaaaagtcttacatgttctacac
ggttactatttttgcaataatggcgattaatgaattttcatcaggaatccttttaagtcg
atcattcacttctgatgtttcactaacacctgcaaaatctagagaaatgaatgcaaactg
ttttctacctggaactgattggaaagatattttgaattacagttctgctttcgattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGTGTACCTGGGTTTATCATT 632 401 216 Antisense
AATCTTGTTTGCTATGCTTTCATTT 231 171 243 Antisense
ATCAGTGGATAGTTTCTCCCTTACA 136 27 329 Antisense
TAATGTGTACCGACCTCTCAAATCA 6 637 384 Antisense
AATTAGCACTGATGACCGCAACTCT 679 173 410 Antisense
AACTCTGCCATGTATCTCTAACAGT 644 139 429 Antisense
GTTCTACACGGTTACTATTTTTGCA 5 445 567 Antisense
GTCGATCATTCACTTCTGATGTTTC 616 473 632 Antisense
GTTTCACTAACACCTGCAAAATCTA 563 449 652 Antisense
GCAAACTGTTTTCTACCTGGAACTG 108 317 688 Antisense
GAATTACAGTTCTGCTTTCGATTTA 266 323 729 Antisense
Sequence Source Affymetrix Proprietary Database