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[182586_at]

Description T13C5.3 /REP_DB=WormBase Gene ID /WP=CE04944 /TR=Q22457 /GB=AAK39289.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 2.7
(-3)
A 		75.5
(3)
A 		39.5
(0)
A 		44
(0.4)
A 		73
B 28.9
(-1.9)
A 		91.1
(3)
P 		57.5
(0.3)
A 		15.5
(-3)
A 		76
C 1.4
(-3)
A 		70.7
(3)
A 		53.1
(1.5)
A 		48.3
(1.1)
A 		69
avr 11
(-3) 		79.1
(3) 		50
(0.4) 		35.9
(-0.8) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 44.3
(1.6)
A 		57.2
(3)
A 		41.1
(1.3)
A 		40.7
(1.2)
A 		3.3
(-2.9)
A 		2
(-3)
A 		55
B 35.4
(2.6)
A 		18.7
(-0.5)
A 		37.8
(3)
A 		37.7
(3)
A 		5.1
(-3)
A 		12
(-1.7)
A 		33
C 29.2
(1.3)
A 		31.6
(1.7)
A 		30.2
(1.5)
A 		38.8
(3)
M 		20.5
(-0.2)
A 		5
(-3)
A 		34
avr 36.3
(2.5) 		35.8
(2.4) 		36.4
(2.5) 		39.1
(3) 		9.6
(-2.4) 		6.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1
(-3)
A 		16.4
(3)
A 		10.3
(0.6)
A 		6.4
(-0.9)
A 		15
B 9.2
(-1.2)
A 		22.5
(3)
P 		13.3
(0.1)
A 		3.3
(-3)
A 		19
C 0.5
(-3)
A 		20.3
(3)
A 		18.5
(2.5)
A 		8.1
(-0.7)
A 		20
avr 3.6
(-3) 		19.7
(3) 		14
(0.9) 		5.9
(-2.1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.2
(-0.7)
A 		20.3
(3)
A 		8.9
(-0.5)
A 		10.3
(-0)
A 		1
(-2.8)
A 		0.5
(-3)
A 		20
B 12.3
(3)
A 		6.2
(-0.6)
A 		9.2
(1.2)
A 		10
(1.6)
A 		2.1
(-3)
A 		4.5
(-1.6)
A 		10
C 10.8
(3)
A 		9.6
(2.2)
A 		7.7
(1)
A 		7.8
(1)
M 		6.6
(0.2)
A 		1.7
(-3)
A 		9
avr 10.4
(2) 		12
(3) 		8.6
(0.9) 		9.4
(1.4) 		3.2
(-2.4) 		2.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16875
Sequence Type Exemplar sequence
Representative Public ID T13C5.3 NCBI
Target Description T13C5.3 /REP_DB=WormBase Gene ID /WP=CE04944 /TR=Q22457 /GB=AAK39289.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076634 NCBI Caenorhabditis elegans T13C5.3 (T13C5.3) mRNA, complete cds. 11/11 None
SNAP00000030089 ENSEMBL cdna:SNAP chromosome:CEL140:X:6179346:6179993:1 11/11 None
GENEFINDER00000030100 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6179346:6181543:1 10/11 None
T13C5.3 ENSEMBL cdna:known chromosome:CEL140:X:6179199:6179993:1 gene:T13C5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6179345-6179993(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13C5.3
Entrez Gene 188473 Entrez gene
SwissProt Q22457 EMBL-EBI
WormBase CE35768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans 2.0E-91
blast AAK39289 Hypothetical protein T13C5.3 [Caenorhabditis elegans] ref|NP_509035.2| T13C5.3 [Caenorhabditis elegans] 4.0E-77
blast AAM15606 Hypothetical protein T13C5.7 [Caenorhabditis elegans] ref|NP_741805.1| T13C5.7 [Caenorhabditis elegans] 3.0E-75
blast AAM15606 Hypothetical protein T13C5.7 [Caenorhabditis elegans] ref|NP_741805.1| T13C5.7 [Caenorhabditis elegans] 4.0E-69
blast AAK39289 Hypothetical protein T13C5.3 [Caenorhabditis elegans] ref|NP_509035.2| T13C5.3 [Caenorhabditis elegans] 1.0E-66
blast T16865 hypothetical protein T13C5.2 - Caenorhabditis elegans 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 5.2E-52
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.8E-14
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.3E-55
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.7E-55
Sequence
Target Sequence 
>C. ELEGANS:182586_AT
aatgttgatccctgtaatgtttgccagaaagtatatgacactgcctgtatgggttttgga
ataccaaatctactaacaggatgccctacagcagcggaagctggtattgaatacgcctta
ggagcagttatcgcattgtttccttttgtaccagctggcgcatgcagtaccgtagttgta
tgcccaccaacaacaactctgcagtacataacttttggaattcaaactccgggaccttct
ccagctgttgcgtggtgtgaagagagtggccctgatgctggcacatggtacactggagcc
agttttctatttcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTGATCCCTGTAATGTTTGCC 451 163 85 Antisense
GACACTGCCTGTATGGGTTTTGGAA 193 367 121 Antisense
ATACGCCTTAGGAGCAGTTATCGCA 240 21 195 Antisense
AGTTATCGCATTGTTTCCTTTTGTA 539 61 210 Antisense
CTTTTGTACCAGCTGGCGCATGCAG 542 221 227 Antisense
GGCGCATGCAGTACCGTAGTTGTAT 73 543 241 Antisense
TGGAATTCAAACTCCGGGACCTTCT 180 503 300 Antisense
CTTCTCCAGCTGTTGCGTGGTGTGA 181 221 320 Antisense
AAGAGAGTGGCCCTGATGCTGGCAC 560 153 344 Antisense
GATGCTGGCACATGGTACACTGGAG 161 413 358 Antisense
ACTGGAGCCAGTTTTCTATTTCGAG 72 97 376 Antisense
Sequence Source Affymetrix Proprietary Database