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[182585_at]

Description Y44A6B.3 /REP_DB=WormBase Gene ID /WP=CE18386 /TR=O62451 /GB=CAA16375.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 18.4
(-2.1)
A 		13.2
(-3)
A 		23.2
(-1.3)
A 		48.7
(3)
A 		36
B 40.6
(3)
A 		8.4
(-2.2)
A 		11.5
(-1.7)
A 		3.7
(-3)
A 		37
C 13.1
(-3)
A 		25.6
(3)
A 		21.9
(1.2)
A 		13.1
(-3)
A 		13
avr 24
(3) 		15.7
(-3) 		18.9
(-0.7) 		21.8
(1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.9
(0.2)
A 		10.7
(-1.5)
A 		27.1
(3)
A 		8.8
(-2)
A 		18
(0.5)
A 		5.1
(-3)
A 		22
B 10.1
(-1.3)
A 		13.5
(-0.2)
A 		4.7
(-2.9)
A 		7.3
(-2.1)
A 		4.4
(-3)
A 		24.1
(3)
A 		20
C 7
(-3)
A 		31.5
(2.2)
A 		35.4
(3)
A 		17.9
(-0.7)
A 		21.5
(0.1)
A 		27.8
(1.4)
A 		28
avr 11.3
(-3) 		18.6
(0.9) 		22.4
(3) 		11.3
(-3) 		14.6
(-1.2) 		19
(1.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(2.4)
A 		2.9
(-3)
A 		6.1
(1.6)
A 		7.1
(3)
A 		4
B 13
(3)
A 		2.1
(-2.4)
A 		2.7
(-2.1)
A 		0.8
(-3)
A 		12
C 4.3
(-0.7)
A 		7.4
(2.8)
A 		7.6
(3)
A 		2.2
(-3)
A 		5
avr 8
(3) 		4.1
(-2.1) 		5.5
(-0.3) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.1
(-0.6)
A 		3.8
(0.3)
A 		5.9
(3)
A 		2.2
(-1.7)
A 		5.4
(2.4)
A 		1.2
(-3)
A 		5
B 3.5
(-1.2)
A 		4.5
(-0.4)
A 		1.1
(-3)
A 		1.9
(-2.4)
A 		1.8
(-2.5)
A 		9
(3)
A 		8
C 2.6
(-3)
A 		9.6
(3)
A 		9
(2.5)
A 		3.6
(-2.1)
A 		6.9
(0.7)
A 		9.3
(2.7)
A 		7
avr 3.1
(-2.2) 		6
(2.2) 		5.3
(1.2) 		2.6
(-3) 		4.7
(0.2) 		6.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13186
Sequence Type Exemplar sequence
Representative Public ID Y44A6B.3 NCBI
Target Description Y44A6B.3 /REP_DB=WormBase Gene ID /WP=CE18386 /TR=O62451 /GB=CAA16375.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075586 NCBI Caenorhabditis elegans Y44A6B.3 (Y44A6B.3) mRNA, complete cds. 11/11 None
GENEFINDER00000021702 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20634915:20636775:-1 11/11 None
Y44A6B.3 ENSEMBL cdna:known chromosome:CEL140:V:20634915:20636775:-1 gene:Y44A6B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021701 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20634914-20636775(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44A6B.3
Entrez Gene 189896 Entrez gene
SwissProt O62451 EMBL-EBI
WormBase CE18386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 0.0
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 3.0E-57
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 4.0E-47
Sequence
Target Sequence 
>C. ELEGANS:182585_AT
tggaattctattctgacgacccttacttttatttcaactatactgttagtatatgccccg
aaaattcgatactatcgacgagagtgacatctaatggaacgttttatgtttgtctcgaag
ttcgctttttttctgacggcatttgttggttgtacgaagatgctcaaaagttgtgcagtg
aaaacaatggaatgggcttaactggacatttccagctatcggaatttgattatttttcaa
aaaggatgattaataatagtaagtataatgaagaatatctcccaaagtcaatgaatggaa
tgcccgaaacgacatggcaattaggcatattcatcgacggaaggtcccttgacgaatcaa
atccaaaaaacttcgaatttgaagacaaaactcacgagggaattcgtaattaccaatttt
ttggtggtactctaaaccaaatcacagtaccaatttatatactgatcgttacatatgccg
atataccgtccaccctagatgctagatgtacctctgatgacttcccaccctgtaacggaa
actactattgtcctcgtggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTCTATTCTGACGACCCTTA 340 545 377 Antisense
TCTGACGACCCTTACTTTTATTTCA 504 607 388 Antisense
TACTGTTAGTATATGCCCCGAAAAT 404 647 417 Antisense
GTTTTATGTTTGTCTCGAAGTTCGC 360 449 477 Antisense
AGTTCGCTTTTTTTCTGACGGCATT 52 65 495 Antisense
CTGACGGCATTTGTTGGTTGTACGA 311 237 509 Antisense
ATTCATCGACGGAAGGTCCCTTGAC 261 11 705 Antisense
TACATATGCCGATATACCGTCCACC 84 645 846 Antisense
ACCGTCCACCCTAGATGCTAGATGT 266 89 861 Antisense
TAGATGTACCTCTGATGACTTCCCA 186 653 879 Antisense
GAAACTACTATTGTCCTCGTGGAGC 407 357 914 Antisense
Sequence Source Affymetrix Proprietary Database