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[182584_at]

Description F02D10.3 /REP_DB=WormBase Gene ID /WP=CE03138 /TR=Q19113 /GB=CAA91934.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.1
(-3)
A 		1.4
(-2.9)
A 		5.9
(-1.6)
A 		22.1
(3)
A 		21
B 1.4
(-1.2)
A 		2.3
(1.9)
A 		0.9
(-3)
A 		2.6
(3)
A 		2
C 1.2
(-3)
A 		3.5
(-2.4)
A 		1.4
(-2.9)
A 		24.1
(3)
A 		23
avr 1.2
(-3) 		2.4
(-2.5) 		2.7
(-2.4) 		16.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3
(-1.7)
A 		6.3
(3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		2.4
(-2.6)
A 		4.1
(-0.1)
A 		4
B 1.4
(-1.7)
A 		1
(-2.7)
A 		1.1
(-2.5)
A 		1.7
(-0.9)
A 		3.2
(3)
A 		0.9
(-3)
A 		2
C 1
(-1.9)
A 		1.5
(-0.4)
A 		2.7
(3)
A 		1
(-1.9)
A 		1.5
(-0.4)
A 		0.6
(-3)
A 		2
avr 1.8
(-2.1) 		2.9
(3) 		2
(-1.2) 		1.6
(-3) 		2.4
(0.7) 		1.9
(-1.6) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.4
(-2.8)
A 		0.3
(-3)
A 		1.5
(-0.5)
A 		3.2
(3)
A 		3
B 0.5
(1.5)
A 		0.6
(3)
A 		0.2
(-3)
A 		0.6
(3)
A 		0
C 0.4
(-3)
A 		1
(-2)
A 		0.5
(-2.8)
A 		4.1
(3)
A 		4
avr 0.4
(-3) 		0.6
(-2.5) 		0.7
(-2.2) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.3
(3)
A 		0.5
(-3)
A 		0.6
(-2.7)
A 		0.7
(-2.3)
A 		1
(-1.3)
A 		2
B 0.5
(-1.8)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(-1.8)
A 		1.3
(3)
A 		0.3
(-3)
A 		1
C 0.4
(-0.6)
A 		0.5
(0.6)
A 		0.7
(3)
A 		0.2
(-3)
A 		0.5
(0.6)
A 		0.2
(-3)
A 		1
avr 0.5
(-2) 		1
(3) 		0.5
(-2) 		0.4
(-3) 		0.8
(1) 		0.5
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17825
Sequence Type Exemplar sequence
Representative Public ID F02D10.3 NCBI
Target Description F02D10.3 /REP_DB=WormBase Gene ID /WP=CE03138 /TR=Q19113 /GB=CAA91934.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077844 NCBI Caenorhabditis elegans F02D10.3 (F02D10.3) mRNA, complete cds. 11/11 None
F02D10.3 ENSEMBL cdna:known chromosome:CEL140:X:13460865:13461809:-1 gene:F02D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039148 5/11 Cross Hyb Matching Probes None
SNAP00000039145 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13460864-13461809(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02D10.3
Entrez Gene 184083 Entrez gene
SwissProt Q19113 EMBL-EBI
WormBase CE03138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91934 Hypothetical protein F02D10.3 [Caenorhabditis elegans] ref|NP_510245.1| F02D10.3 [Caenorhabditis elegans] 2.0E-41
Sequence
Target Sequence 
>C. ELEGANS:182584_AT
gctcgaggccagcaaaatcaacagcgaggacaatactccggcacgatcagagagtcgtca
tgaaggacaaaaatatgagaatctcggcgggttcaagagacaagaacctttgcaaaatta
tggtcgtcatgcgaacaatgtaggtttcagaaaaaaaacttttttcgattatgagtacca
ggacaatgaatatcgcagtggacgatattccgggcagtattacttttctagatcacttga
cctactacgtagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGAGGCCAGCAAAATCAACAGC 100 299 15 Antisense
AACAGCGAGGACAATACTCCGGCAC 474 135 34 Antisense
ACTCCGGCACGATCAGAGAGTCGTC 649 97 49 Antisense
ATATGAGAATCTCGGCGGGTTCAAG 685 17 87 Antisense
GAACCTTTGCAAAATTATGGTCGTC 484 345 118 Antisense
GGTCGTCATGCGAACAATGTAGGTT 607 497 136 Antisense
GTACCAGGACAATGAATATCGCAGT 30 459 189 Antisense
TCGCAGTGGACGATATTCCGGGCAG 230 601 207 Antisense
GATATTCCGGGCAGTATTACTTTTC 329 419 218 Antisense
ATTACTTTTCTAGATCACTTGACCT 166 13 233 Antisense
AGATCACTTGACCTACTACGTAGTA 229 67 244 Antisense
Sequence Source Affymetrix Proprietary Database