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[182583_at]

Description M03A8.3 /REP_DB=WormBase Gene ID /WP=CE04772 /TR=Q21479 /GB=AAA83182.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      6grp_total > 32      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 120.7
(-3)
P 		166.3
(-0.6)
A 		222.4
(2.4)
A 		234.5
(3)
A 		114
B 160.2
(-1.6)
P 		126.6
(-3)
A 		139.8
(-2.4)
M 		267.7
(3)
P 		141
C 134.8
(-2.5)
A 		119.3
(-3)
A 		154.4
(-1.8)
P 		298.1
(3)
M 		179
avr 138.6
(-2.9) 		137.4
(-3) 		172.2
(-1.4) 		266.8
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 194.3
(1)
M 		160.5
(-0.7)
A 		152.4
(-1.1)
A 		231.9
(3)
A 		164.6
(-0.5)
P 		116.9
(-3)
M 		115
B 161.4
(0.3)
A 		166.8
(0.7)
A 		185.9
(2.3)
P 		174.4
(1.3)
P 		194.7
(3)
P 		120.9
(-3)
P 		74
C 182.3
(1.6)
P 		160.1
(-0.1)
P 		201.2
(3)
P 		134.2
(-2)
A 		158.7
(-0.2)
P 		121.5
(-3)
P 		80
avr 179.3
(2.9) 		162.5
(1.2) 		179.8
(3) 		180.2
(3) 		172.7
(2.3) 		119.8
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 43.9
(-0.6)
P 		36.1
(-2.5)
A 		58.1
(3)
A 		34.3
(-3)
A 		24
B 51.1
(1.6)
P 		31.3
(-3)
A 		32.4
(-2.7)
M 		57
(3)
P 		26
C 44.6
(0.2)
A 		34.3
(-3)
A 		53.8
(3)
P 		50.3
(1.9)
M 		20
avr 46.5
(2.3) 		33.9
(-3) 		48.1
(3) 		47.2
(2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 35.8
(-1.6)
M 		57.1
(2.7)
A 		33.2
(-2.1)
A 		58.8
(3)
A 		49.7
(1.2)
P 		28.5
(-3)
M 		30
B 56.2
(-1)
A 		55.5
(-1.2)
A 		45.1
(-3)
P 		46.2
(-2.8)
P 		79.1
(3)
P 		45.1
(-3)
P 		34
C 67.6
(3)
P 		48.8
(0.2)
P 		51.2
(0.6)
P 		27
(-3)
A 		51.3
(0.6)
P 		40.7
(-1)
P 		41
avr 53.2
(1.1) 		53.8
(1.3) 		43.2
(-1.6) 		44
(-1.4) 		60
(3) 		38.1
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16108
Sequence Type Exemplar sequence
Representative Public ID M03A8.3 NCBI
Target Description M03A8.3 /REP_DB=WormBase Gene ID /WP=CE04772 /TR=Q21479 /GB=AAA83182.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076742
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010632 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6801402:6803204:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076742 8/11 Cross Hyb Matching Probes None
SNAP00000010627 6/11 Cross Hyb Matching Probes None
M03A8.3 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6802092-6802572(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509143 M03A8.3 [Caenorhabditis elegans] 1.0E-137
blast CAE65792 Hypothetical protein CBG10896 [Caenorhabditis briggsae] 1.0E-131
blast T16636 hypothetical protein M03A8.3 - Caenorhabditis elegans 2.0E-62
Sequence
Target Sequence 
>C. ELEGANS:182583_AT
gaacatcttcaaatcagtggtccgaataacgtgcattgtattccataccagacgttgata
tgggttggaacgggggaacattgcgttggctttggagttgaaaatttgggaatttttgaa
tttgccactggagatgccattcttttcgtggaacacttgagaagttttattcgatttagt
tgtgacttcagcacccctcagacaaaaacgatttgccgcttcaatcgttattttcatccc
aatagactcgtgaataacaccagcccagggctcaggtactttgcatttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCTTCAAATCAGTGGTCCGA 538 351 79 Antisense
ACGTGCATTGTATTCCATACCAGAC 338 95 107 Antisense
GGAACATTGCGTTGGCTTTGGAGTT 381 529 153 Antisense
GGGAATTTTTGAATTTGCCACTGGA 635 493 186 Antisense
GCCACTGGAGATGCCATTCTTTTCG 457 279 202 Antisense
GCCATTCTTTTCGTGGAACACTTGA 81 281 214 Antisense
ATTTAGTTGTGACTTCAGCACCCCT 675 15 252 Antisense
CAGCACCCCTCAGACAAAAACGATT 97 203 267 Antisense
TTGCCGCTTCAATCGTTATTTTCAT 65 703 291 Antisense
GACTCGTGAATAACACCAGCCCAGG 73 375 323 Antisense
CAGGGCTCAGGTACTTTGCATTTCC 128 209 344 Antisense
Sequence Source Affymetrix Proprietary Database