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[182582_at]

Description Y60A3A.4 /REP_DB=WormBase Gene ID /WP=CE24528 /TR=Q9U1Z8 /GB=CAB60393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 44      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 43
(3)
A 		16.2
(-3)
A 		18.7
(-2.4)
A 		31.9
(0.5)
A 		27
B 37.4
(0)
A 		64.1
(3)
A 		10.7
(-3)
A 		26.5
(-1.2)
A 		53
C 43
(2.1)
A 		49.6
(3)
A 		21.7
(-0.9)
A 		7.2
(-3)
A 		42
avr 41.1
(2.5) 		43.3
(3) 		17
(-3) 		21.9
(-1.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 51.8
(3)
A 		16.3
(-2.3)
A 		11.3
(-3)
A 		23.8
(-1.1)
A 		44.6
(1.9)
A 		45.3
(2)
A 		41
B 45.2
(2.2)
A 		7.1
(-2.9)
A 		50.8
(3)
A 		17.6
(-1.5)
A 		30.4
(0.2)
A 		6.4
(-3)
A 		44
C 32.6
(1.7)
A 		11.5
(-1.9)
A 		40.3
(3)
A 		15.9
(-1.1)
A 		28.1
(0.9)
A 		5
(-3)
A 		35
avr 43.2
(3) 		11.6
(-3) 		34.1
(1.3) 		19.1
(-1.6) 		34.4
(1.3) 		18.9
(-1.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.7
(3)
A 		3.5
(-3)
A 		4.9
(-2.3)
A 		4.7
(-2.4)
A 		12
B 11.9
(1.2)
A 		15.8
(3)
A 		2.5
(-3)
A 		5.6
(-1.6)
A 		13
C 14.2
(3)
A 		14.3
(3)
A 		7.5
(-0.1)
A 		1.2
(-3)
A 		13
avr 13.9
(3) 		11.2
(1.4) 		5
(-2.3) 		3.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.5
(0.8)
A 		5.8
(-1.2)
A 		2.5
(-3)
A 		6
(-1.1)
A 		13.5
(3)
A 		11
(1.6)
A 		11
B 15.7
(3)
A 		2.4
(-3)
A 		12.3
(1.5)
A 		4.7
(-2)
A 		12.4
(1.5)
A 		2.4
(-3)
A 		13
C 12.1
(3)
A 		3.5
(-2)
A 		10.2
(1.9)
A 		3.2
(-2.1)
A 		9.1
(1.3)
A 		1.7
(-3)
A 		10
avr 12.4
(3) 		3.9
(-3) 		8.3
(0.1) 		4.6
(-2.5) 		11.7
(2.5) 		5
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14713
Sequence Type Exemplar sequence
Representative Public ID Y60A3A.4 NCBI
Target Description Y60A3A.4 /REP_DB=WormBase Gene ID /WP=CE24528 /TR=Q9U1Z8 /GB=CAB60393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075465
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075465 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-173) (srh-173) mRNA, complete cds. None
Y60A3A.4 ENSEMBL cdna:known chromosome:CEL140:V:19971286:19973060:1 gene:Y60A3A.4 None
SNAP00000032813 ENSEMBL cdna:SNAP chromosome:CEL140:V:19971286:19972633:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032820 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19971285-19973060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-173
Ensembl Y60A3A.4
Entrez Gene 190432 Entrez gene
SwissProt Q9U1Z8 EMBL-EBI
WormBase CE36045 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60393 Hypothetical protein Y60A3A.4 [Caenorhabditis elegans] ref|NP_507866.2| Serpentine Receptor, class H family member (srh-173) [Caenorhabditis elegans] 1.0E-170
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 1.0E-113
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 1.0E-107
blast CAB60393 Hypothetical protein Y60A3A.4 [Caenorhabditis elegans] ref|NP_507866.2| Serpentine Receptor, class H family member (srh-173) [Caenorhabditis elegans] 8.0E-76
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 2.0E-51
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.5E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507866.2 7 15-36,49-71,91-113,134-156,190-212,232-254,269-291
Y60A3A.4 7 15-36,49-71,91-113,134-156,190-212,232-254,269-291
SNAP00000032813 4 15-36,49-71,91-113,134-156
Sequence
Target Sequence 
>C. ELEGANS:182582_AT
gctccagcgtttttcaacatacctagtgaagagcaaggaagggcatatacttttgaggta
agttattattatgattatcattattatcatgtatccgtatccgttttagaatccgtcttc
cagaaaatccccaacatacccaacgatattccttttcgccctggattcttcgccctatca
actgacaaccaagtctacagcatttgcattatttcccttatcttcgtagtctgcccacaa
attatactcttcgtcttgttaatattccgatatctcacccaaactcgatcccagtccccg
gcaacacttcgcttacaacttttatttttcattgctatgtgtttccagctatctataccg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAGCGTTTTTCAACATACCTA 703 297 454 Antisense
TATTATCATGTATCCGTATCCGTTT 470 661 535 Antisense
TATCCGTTTTAGAATCCGTCTTCCA 667 657 551 Antisense
GTCTTCCAGAAAATCCCCAACATAC 493 467 568 Antisense
CATACCCAACGATATTCCTTTTCGC 221 209 588 Antisense
TCGCCCTATCAACTGACAACCAAGT 192 599 623 Antisense
ATTATTTCCCTTATCTTCGTAGTCT 447 13 661 Antisense
GTCTGCCCACAAATTATACTCTTCG 263 471 682 Antisense
TTCCGATATCTCACCCAAACTCGAT 196 699 718 Antisense
GCAACACTTCGCTTACAACTTTTAT 212 319 754 Antisense
ATGTGTTTCCAGCTATCTATACCGT 429 49 790 Antisense
Sequence Source Affymetrix Proprietary Database