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[182581_s_at]

Description Y53H1A.1 /REP_DB=WormBase Gene ID /WP=CE25431 /TR=Q9U252 /GB=CAB63392.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 55.3
(-3)
A 		68.3
(-2)
A 		71.2
(-1.8)
A 		133.2
(3)
P 		78
B 70.9
(-3)
A 		80.3
(-1.3)
A 		86.5
(-0.1)
A 		103.4
(3)
P 		33
C 95.8
(0.2)
A 		142.4
(2.2)
A 		18.8
(-3)
A 		161.9
(3)
P 		143
avr 74
(-1.8) 		97
(0.1) 		58.8
(-3) 		132.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 118.6
(3)
A 		76.7
(-0.2)
A 		92.8
(1)
A 		41.2
(-3)
A 		45.5
(-2.7)
A 		67.9
(-0.9)
A 		77
B 120.7
(1.1)
A 		150.9
(3)
M 		77.4
(-1.6)
A 		55
(-3)
A 		66
(-2.3)
A 		100.5
(-0.2)
A 		96
C 76.7
(0.2)
M 		108.9
(3)
A 		84.6
(0.8)
A 		44.5
(-2.7)
A 		65.3
(-0.9)
A 		41.1
(-3)
A 		68
avr 105.3
(2.4) 		112.2
(3) 		84.9
(0.5) 		46.9
(-3) 		58.9
(-1.9) 		69.8
(-0.9) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.1
(3)
A 		14.8
(-3)
A 		18.6
(1.3)
A 		19.5
(2.3)
P 		5
B 22.6
(3)
A 		19.8
(-3)
A 		20
(-2.6)
A 		22
(1.7)
P 		3
C 31.7
(1.4)
A 		40.9
(3)
A 		6.5
(-3)
A 		27.3
(0.6)
P 		34
avr 24.8
(2.8) 		25.2
(3) 		15
(-3) 		22.9
(1.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.9
(1.1)
A 		27.3
(3)
A 		20.2
(0.5)
A 		10.5
(-3)
A 		13.7
(-1.9)
A 		16.5
(-0.9)
A 		17
B 42
(1.6)
A 		50.2
(3)
M 		18.8
(-2.3)
A 		14.6
(-3)
A 		26.8
(-0.9)
A 		37.5
(0.9)
A 		36
C 28.4
(1.8)
M 		33.2
(3)
A 		21.5
(0.1)
A 		9
(-3)
A 		21.1
(0)
A 		13.8
(-1.8)
A 		24
avr 30.8
(1.6) 		36.9
(3) 		20.2
(-0.9) 		11.4
(-3) 		20.5
(-0.9) 		22.6
(-0.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182581_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1712
Sequence Type Exemplar sequence
Representative Public ID Y53H1A.1 NCBI
Target Description Y53H1A.1 /REP_DB=WormBase Gene ID /WP=CE25431 /TR=Q9U252 /GB=CAB63392.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060477 NCBI Caenorhabditis elegans Y53H1A.1 (Y53H1A.1) mRNA, complete cds. 11/11 None
SNAP00000030281 ENSEMBL cdna:SNAP chromosome:CEL140:I:11224497:11230099:-1 10/11 None
GENEFINDER00000030286 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11224497:11230178:-1 11/11 None
Y53H1A.1 ENSEMBL cdna:known chromosome:CEL140:I:11224362:11230099:-1 gene:Y53H1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11224427-11230030(-) 98.26 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53H1A.1
Entrez Gene 173015 Entrez gene
SwissProt Q9U252 EMBL-EBI
WormBase CE25431 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260307_AT cyclin-related at
CANINE:1605343_AT hypothetical LOC475005 cfa
CANINE:1604669_AT hypothetical LOC475005 cfa
CANINE:1602862_X_AT hypothetical LOC475005 cfa
CANINE:1600376_S_AT hypothetical LOC475005 cfa
CANINE:1593522_S_AT hypothetical LOC475005 cfa
CANINE:1587701_AT hypothetical LOC475005 cfa
CANINE_2:CFA.11880.1.A1_AT hypothetical LOC475005 cfa
CANINE_2:CFA.15354.1.S1_S_AT hypothetical LOC475005 cfa
CANINE_2:CFA.20850.1.S1_S_AT hypothetical LOC475005 cfa
CANINE_2:CFA.2836.1.A1_AT hypothetical LOC475005 cfa
CANINE_2:CFAAFFX.6158.1.S1_AT hypothetical LOC475005 cfa
DROSOPHILA_2:1625895_A_AT dm
DROSGENOME1:154729_AT dm
DROSGENOME1:149718_AT dm
CHICKEN:GGA.5232.1.S1_S_AT similar to chromosome 6 open reading frame 111; SR rich protein gga
CHICKEN:GGA.700.2.A1_S_AT similar to chromosome 6 open reading frame 111; SR rich protein gga
CHICKEN:GGA.9787.1.S1_AT similar to chromosome 6 open reading frame 111; SR rich protein gga
CHICKEN:GGAAFFX.11694.1.S1_AT similar to chromosome 6 open reading frame 111; SR rich protein gga
HU35KSUBA:RC_AA463215_AT chromosome 6 open reading frame 111 hs
HU35KSUBA:AA461235_S_AT chromosome 6 open reading frame 111 hs
HU35KSUBA:RC_AA489707_AT chromosome 6 open reading frame 111 hs
HU35KSUBC:RC_AA279167_AT chromosome 6 open reading frame 111 hs
HU35KSUBC:RC_AA159606_AT chromosome 6 open reading frame 111 hs
HU35KSUBD:RC_AA406385_AT chromosome 6 open reading frame 111 hs
HU35KSUBD:RC_AA196729_I_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.3.S1_3P_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.3.S1_3P_A_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.2.S3_3P_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.2.S2_3P_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.2.S1_3P_X_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.2.S1_3P_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.2.S1_3P_A_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.1.S1_3P_AT chromosome 6 open reading frame 111 hs
U133_X3P:HS.18368.0.S1_3P_AT chromosome 6 open reading frame 111 hs
HG-U133A_2:212176_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:212176_AT chromosome 6 open reading frame 111 hs
HG-U133A:212176_AT chromosome 6 open reading frame 111 hs
HG-U133A_2:212177_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:212177_AT chromosome 6 open reading frame 111 hs
HG-U133A:212177_AT chromosome 6 open reading frame 111 hs
HG-U133A_2:212179_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:212179_AT chromosome 6 open reading frame 111 hs
HG-U133A:212179_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:225507_AT chromosome 6 open reading frame 111 hs
HG-U133B:225507_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:226412_AT chromosome 6 open reading frame 111 hs
HG-U133B:226412_AT chromosome 6 open reading frame 111 hs
HG-U133_PLUS_2:230375_AT chromosome 6 open reading frame 111 hs
HG-U133B:230375_AT chromosome 6 open reading frame 111 hs
HG-U95AV2:41784_AT chromosome 6 open reading frame 111 hs
HG-U95B:44644_AT chromosome 6 open reading frame 111 hs
HG-U95B:49550_AT chromosome 6 open reading frame 111 hs
HG-U95B:56251_AT chromosome 6 open reading frame 111 hs
HG-U95C:62725_AT chromosome 6 open reading frame 111 hs
HG-U95C:63843_AT Chromosome 6 open reading frame 111 hs
U133_X3P:212177_3P_AT Chromosome 6 open reading frame 111 hs
MG-U74BV2:110957_AT RIKEN cDNA 5730406M06 gene mm
MG-U74BV2:113608_AT RIKEN cDNA 5730406M06 gene mm
MG-U74BV2:163932_I_AT RIKEN cDNA 5730406M06 gene mm
MG-U74BV2:162852_S_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1429537_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1429537_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1453186_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1453186_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1429538_A_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1429538_A_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1453185_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1453185_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1435080_X_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1435080_X_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1435079_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1435079_AT RIKEN cDNA 5730406M06 gene mm
MOE430B:1437041_AT RIKEN cDNA 5730406M06 gene mm
MOUSE430_2:1437041_AT RIKEN cDNA 5730406M06 gene mm
MU19KSUBA:TC17423_AT RIKEN cDNA 5730406M06 gene mm
MG-U74BV2:162853_R_AT PREDICTED: hypothetical protein LOC66625 [Mus musculus], mRNA sequence mm
MU19KSUBB:TC31976_S_AT PREDICTED: hypothetical protein LOC66625 [Mus musculus], mRNA sequence mm
MU19KSUBC:TC41879_AT PREDICTED: hypothetical protein LOC66625 [Mus musculus], mRNA sequence mm
RG-U34B:RC_AA925771_AT similar to SR rich protein (predicted) rn
RAE230A:1373534_AT similar to SR rich protein (predicted) rn
RAT230_2:1373534_AT similar to SR rich protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB63392 Hypothetical protein Y53H1A.1 [Caenorhabditis elegans] ref|NP_492878.1| Y53H1A.1 [Caenorhabditis elegans] 1.0E-119
blast CAB63392 Hypothetical protein Y53H1A.1 [Caenorhabditis elegans] ref|NP_492878.1| Y53H1A.1 [Caenorhabditis elegans] 1.0E-111
blast CAB63392 Hypothetical protein Y53H1A.1 [Caenorhabditis elegans] ref|NP_492878.1| Y53H1A.1 [Caenorhabditis elegans] 1.0E-100
blast CAE63485 Hypothetical protein CBG07953 [Caenorhabditis briggsae] 2.0E-17
blast CAE63485 Hypothetical protein CBG07953 [Caenorhabditis briggsae] 1.0E-16
blast CAE63485 Hypothetical protein CBG07953 [Caenorhabditis briggsae] 8.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182581_S_AT
catcggcaacagctcagcgttggcggctctcgcggcttttggtatggagaagctcgcgaa
aattcgaaattcggaaaaaacaatttttttgaccagaaaattcggttttaaaagagacgg
tgaggatagtgacaacagcagtgacgatggagttggcgacgacatggagccacggcagga
gagcagtggctcggcggagctaaatggagcatcaggggcagcagaagcaggaacaccaga
agctggtggtggagagttcaaggctcccgtgggtatccctcgaaagtttagtgttaagac
agatgatgtcaaaccatcagttaatgatgatggtgaaggtgttgatgatttacacgttcc
agattcaaaaaacggcgataataaaaaatcggaaaaatcgtcgtcggaaaagaagagaga
acgagagatgagagacgatgagaaggagagaaaatcgagtaaaaagagcaaaaaacgatc
gaaaagtcgtgaaaaagagcaatcttcatcacgacataatcaccgatcgagaagccgatc
ttcggaacgggatcgccgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGGCAACAGCTCAGCGTTGGCG 305 211 1227 Antisense
GCTCTCGCGGCTTTTGGTATGGAGA 108 301 1252 Antisense
GTGACGATGGAGTTGGCGACGACAT 191 481 1367 Antisense
CGACGACATGGAGCCACGGCAGGAG 117 251 1383 Antisense
AGGAGAGCAGTGGCTCGGCGGAGCT 555 55 1403 Antisense
GGAGCATCAGGGGCAGCAGAAGCAG 243 521 1432 Antisense
GGTGGAGAGTTCAAGGCTCCCGTGG 612 497 1474 Antisense
GTGGGTATCCCTCGAAAGTTTAGTG 424 487 1495 Antisense
GTTGATGATTTACACGTTCCAGATT 569 437 1567 Antisense
CAATCTTCATCACGACATAATCACC 473 181 1726 Antisense
ATCTTCGGAACGGGATCGCCGTCGA 481 5 1764 Antisense
Sequence Source Affymetrix Proprietary Database