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[182580_at]

Description Y47H9C.2 /REP_DB=WormBase Gene ID /WP=CE20263 /TR=Q9XWD7 /GB=CAA21738.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 46      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 566.3
(3)
P 		359.6
(-1.6)
P 		437.5
(0.2)
P 		294
(-3)
P 		272
B 654
(3)
P 		413.4
(-0.6)
P 		280.5
(-2.5)
P 		248.8
(-3)
P 		405
C 576.9
(3)
P 		345.7
(-3)
P 		361
(-2.6)
P 		349.8
(-2.9)
P 		231
avr 599.1
(3) 		372.9
(-1.5) 		359.7
(-1.8) 		297.5
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 486.6
(3)
P 		427.5
(1.3)
P 		293.7
(-2.6)
P 		311.8
(-2.1)
P 		423.9
(1.2)
P 		279.4
(-3)
P 		207
B 436.2
(-0.2)
P 		627.6
(3)
P 		342.5
(-1.8)
P 		428.3
(-0.4)
P 		427.3
(-0.4)
P 		271.4
(-3)
P 		356
C 497.7
(0.8)
P 		606.6
(3)
P 		436
(-0.4)
P 		433.7
(-0.4)
P 		406.7
(-1)
P 		303
(-3)
P 		304
avr 473.5
(1.2) 		553.9
(3) 		357.4
(-1.4) 		391.3
(-0.6) 		419.3
(0) 		284.6
(-3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 206.2
(3)
P 		78.1
(-1.7)
P 		114.4
(-0.4)
P 		43
(-3)
P 		163
B 208.6
(3)
P 		102.1
(-1.1)
P 		65
(-2.5)
P 		53
(-3)
P 		156
C 191
(3)
P 		99.4
(-1.2)
P 		125.8
(0)
P 		59
(-3)
P 		132
avr 201.9
(3) 		93.2
(-1.3) 		101.7
(-1) 		51.7
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 89.7
(-1.2)
P 		152
(3)
P 		64
(-3)
P 		79.1
(-2)
P 		127.9
(1.4)
P 		68
(-2.7)
P 		88
B 151.8
(0.3)
P 		208.9
(3)
P 		83.2
(-3)
P 		113.4
(-1.6)
P 		173.6
(1.3)
P 		101.2
(-2.1)
P 		126
C 184.5
(3)
P 		185.1
(3)
P 		111
(-1.5)
P 		87.2
(-3)
P 		131.6
(-0.3)
P 		101.4
(-2.1)
P 		98
avr 142
(0.5) 		182
(3) 		86.1
(-3) 		93.2
(-2.6) 		144.4
(0.6) 		90.2
(-2.7) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.557
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.2 NCBI
Target Description Y47H9C.2 /REP_DB=WormBase Gene ID /WP=CE20263 /TR=Q9XWD7 /GB=CAA21738.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060606 NCBI Caenorhabditis elegans Y47H9C.2 (Y47H9C.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036896 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11852871:11857282:1 11/11 None
Y47H9C.2 ENSEMBL cdna:known chromosome:CEL140:I:11852863:11857306:1 gene:Y47H9C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11852801-11857213(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9C.2
Entrez Gene 173062 Entrez gene
SwissProt Q9XWD7 EMBL-EBI
WormBase CE20263 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251710_AT zinc finger (DHHC type) family protein at
CANINE_2:CFAAFFX.1855.1.S1_S_AT similar to NEW1 domain containing protein isoform 1 cfa
DROSOPHILA_2:1639088_AT dm
DROSGENOME1:148644_AT dm
CHICKEN:GGAAFFX.8722.1.S1_AT similar to NEW1 domain containing protein gga
CHICKEN:GGAAFFX.8722.1.S1_S_AT similar to NEW1 domain containing protein gga
HG-U133_PLUS_2:219247_S_AT zinc finger, DHHC-type containing 14 hs
HG-U133A:219247_S_AT zinc finger, DHHC-type containing 14 hs
HG-U133A_2:219247_S_AT zinc finger, DHHC-type containing 14 hs
HU35KSUBA:RC_AA432270_AT zinc finger, DHHC-type containing 14 hs
HU35KSUBC:RC_AA481052_AT zinc finger, DHHC-type containing 14 hs
U133_X3P:G13375857_3P_A_AT zinc finger, DHHC-type containing 14 hs
U133_X3P:HS2.292541.1.A1_3P_AT zinc finger, DHHC-type containing 14 hs
HG-U133_PLUS_2:1556967_AT zinc finger, DHHC-type containing 14 hs
HG-U95B:51975_AT zinc finger, DHHC-type containing 14 hs
U133_X3P:HS.210938.0.A1_3P_AT Zinc finger, DHHC-type containing 14 hs
U133_X3P:HS.135230.0.A1_3P_AT Zinc finger, DHHC-type containing 14 hs
HG-U133_PLUS_2:235133_AT Zinc finger, DHHC-type containing 14 hs
HG-U133B:235133_AT Zinc finger, DHHC-type containing 14 hs
HG-U133_PLUS_2:239281_AT Zinc finger, DHHC-type containing 14 hs
HG-U133B:239281_AT Zinc finger, DHHC-type containing 14 hs
HG-U95E:87065_AT Zinc finger, DHHC-type containing 14 hs
HG-U95E:89020_AT Zinc finger, DHHC-type containing 14 hs
HG-U95D:69316_AT Zinc finger, DHHC-type containing 14 hs
HG-U95D:69368_AT Zinc finger, DHHC-type containing 14 hs
HG-U95E:82507_R_AT Zinc finger, DHHC-type containing 14 hs
HG-U95D:86852_R_AT Zinc finger, DHHC-type containing 14 hs
MOE430A:1438151_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1438151_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1438151_X_AT zinc finger, DHHC domain containing 14 mm
MU11KSUBA:AA216865_AT zinc finger, DHHC domain containing 14 mm
MG-U74AV2:104299_AT zinc finger, DHHC domain containing 14 mm
MOE430A:1437614_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1437614_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1437614_X_AT zinc finger, DHHC domain containing 14 mm
MOE430A:1438619_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1438619_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1438619_X_AT zinc finger, DHHC domain containing 14 mm
MOE430A:1423668_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1423668_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1423668_AT zinc finger, DHHC domain containing 14 mm
MOE430A:1437616_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1437616_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1437616_X_AT zinc finger, DHHC domain containing 14 mm
MOE430A:1438975_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430A_2:1438975_X_AT zinc finger, DHHC domain containing 14 mm
MOUSE430_2:1438975_X_AT zinc finger, DHHC domain containing 14 mm
MG-U74AV2:161782_R_AT Zinc finger, DHHC domain containing 14 (Zdhhc14), mRNA mm
MU19KSUBA:TC21175_AT Zinc finger, DHHC domain containing 14 (Zdhhc14), mRNA mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21738 Hypothetical protein Y47H9C.2 [Caenorhabditis elegans] ref|NP_493007.1| Y47H9C.2 [Caenorhabditis elegans] 0.0
blast CAA21738 Hypothetical protein Y47H9C.2 [Caenorhabditis elegans] ref|NP_493007.1| Y47H9C.2 [Caenorhabditis elegans] 1.0E-178
blast CAE69624 Hypothetical protein CBG15860 [Caenorhabditis briggsae] 1.0E-148
blast CAE69624 Hypothetical protein CBG15860 [Caenorhabditis briggsae] 1.0E-124
blast NP_078906 NEW1 domain containing protein isoform 1 [Homo sapiens] emb|CAI39699.1| zinc finger, DHHC domain containing 14 [Homo sapiens] emb|CAI42853.1| zinc finger, DHHC domain containing 14 [Homo sapiens] emb|CAI20404.1| zinc finger, DHHC domain containing 14 [Homo sapiens] gb|AAN47142.1| NEW1 domain containing protein [Homo sapiens] sp|Q8IZN3|ZDH14_HUMAN Zinc finger DHHC domain containing protein 14 (NEW1 domain containing protein) (NEW1CP) 1.0E-78
blast NP_078906 NEW1 domain containing protein isoform 1 [Homo sapiens] emb|CAI39699.1| zinc finger, DHHC domain containing 14 [Homo sapiens] emb|CAI42853.1| zinc finger, DHHC domain containing 14 [Homo sapiens] emb|CAI20404.1| zinc finger, DHHC domain containing 14 [Homo sapiens] gb|AAN47142.1| NEW1 domain containing protein [Homo sapiens] sp|Q8IZN3|ZDH14_HUMAN Zinc finger DHHC domain containing protein 14 (NEW1 domain containing protein) (NEW1CP) 6.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.1E-31
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.1E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493007.1 4 63-82,92-114,212-234,249-271
Y47H9C.2 4 63-82,92-114,212-234,249-271
GENEFINDER00000036896 3 52-74,180-202,217-239
Sequence
Target Sequence 
>C. ELEGANS:182580_AT
acgacgtgtcggttatatcggccaccgagatgctcacattgtgcaatttgtgataattgt
gttcttatgttcgatcatcattgcccgtgggtcggcaactgtatcggactccgaaattac
acgtatttctatcgattcgtattttgtctttcaattcttgtgatctacctatttgccagt
gcagtcacacatatcagtttattagctcaagagatgccattcggagatgtcatgcgaaaa
actcccgggtctgcagtcgtcattgtcatatgctttttcacaacgtggtcaattattggt
ttggcatgcttccatacttatcttctgtgcgcggatcttacgacaaatgaagatctaaaa
ggcctgtaccgccggaagcatcgtccaacacctccatcatctacaccatcaacatctgca
gctaccaattcttctgtaggacattcgacaaaaaatccattttacgctggatgcttcaag
agtttttttggaagactgttcaagtccagatttccaagcttactcgacgcccgcggctac
ctggacccacatccgacaatcgaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACGTGTCGGTTATATCGGCCAC 388 91 511 Antisense
GGCCACCGAGATGCTCACATTGTGC 572 543 530 Antisense
TGGGTCGGCAACTGTATCGGACTCC 641 549 598 Antisense
TGATCTACCTATTTGCCAGTGCAGT 529 563 671 Antisense
CATGCGAAAAACTCCCGGGTCTGCA 440 207 741 Antisense
GTCATATGCTTTTTCACAACGTGGT 2 469 775 Antisense
TTGGCATGCTTCCATACTTATCTTC 208 709 811 Antisense
TTCTGTGCGCGGATCTTACGACAAA 78 695 833 Antisense
TAAAAGGCCTGTACCGCCGGAAGCA 484 627 866 Antisense
CAGATTTCCAAGCTTACTCGACGCC 409 205 1017 Antisense
GGACCCACATCCGACAATCGAAATC 649 521 1053 Antisense
Sequence Source Affymetrix Proprietary Database