[Home] | [Total List]

[182579_at]

Description C08E3.7 /REP_DB=WormBase Gene ID /WP=CE08010 /TR=O17198 /GB=AAB70960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 3.7
(-3)
A 		14.4
(-0.6)
A 		14.6
(-0.5)
A 		30.1
(3)
A 		26
B 7.2
(-1.2)
A 		13.5
(3)
A 		11.3
(1.5)
A 		4.5
(-3)
A 		9
C 23.3
(-0.1)
A 		7.2
(-2.9)
A 		6.5
(-3)
A 		40.8
(3)
A 		34
avr 11.4
(-2.7) 		11.7
(-2.6) 		10.8
(-3) 		25.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 25.4
(-2.7)
A 		14.7
(-3)
A 		125.8
(0.1)
A 		231
(3)
P 		94.3
(-0.8)
A 		75.7
(-1.3)
A 		216
B 32.5
(-3)
A 		64.1
(-1.7)
A 		61
(-1.8)
A 		176.4
(3)
M 		166.5
(2.6)
P 		92.6
(-0.5)
A 		144
C 17.7
(-2.8)
A 		49
(-1.2)
A 		12.8
(-3)
A 		114.3
(2.1)
M 		131.2
(3)
P 		120.6
(2.5)
A 		118
avr 25.2
(-3) 		42.6
(-2.3) 		66.5
(-1.3) 		173.9
(3) 		130.7
(1.3) 		96.3
(-0.1) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-3)
A 		3.1
(0.4)
A 		3.8
(1.8)
A 		4.4
(3)
A 		3
B 2.3
(0.5)
A 		3.3
(3)
A 		2.6
(1.3)
A 		0.9
(-3)
A 		2
C 7.7
(3)
A 		2.1
(-3)
A 		2.3
(-2.8)
A 		6.9
(2.1)
A 		6
avr 3.8
(1.6) 		2.8
(-3) 		2.9
(-2.5) 		4.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 4.7
(-3)
A 		5.2
(-2.9)
A 		27.4
(-0.5)
A 		58.6
(3)
P 		28.4
(-0.4)
A 		18.4
(-1.5)
A 		54
B 11.3
(-3)
A 		21.3
(-1.9)
A 		14.8
(-2.6)
A 		46.7
(0.8)
M 		67.7
(3)
P 		34.5
(-0.5)
A 		56
C 6.6
(-2.5)
A 		14.9
(-1.2)
A 		3.3
(-3)
A 		23
(0)
M 		42.5
(3)
P 		40.4
(2.7)
A 		39
avr 7.5
(-3) 		13.8
(-2) 		15.2
(-1.8) 		42.8
(2.5) 		46.2
(3) 		31.1
(0.7) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5257
Sequence Type Exemplar sequence
Representative Public ID C08E3.7 NCBI
Target Description C08E3.7 /REP_DB=WormBase Gene ID /WP=CE08010 /TR=O17198 /GB=AAB70960.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061611 NCBI Caenorhabditis elegans C08E3.7 (C08E3.7) mRNA, complete cds. 11/11 None
SNAP00000042048 ENSEMBL cdna:SNAP chromosome:CEL140:II:1612838:1613842:-1 11/11 None
GENEFINDER00000042068 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1612838:1614006:-1 11/11 None
C08E3.7 ENSEMBL cdna:known chromosome:CEL140:II:1612838:1614006:-1 gene:C08E3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1612836-1614005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.7
Entrez Gene 182399 Entrez gene
SwissProt O17198 EMBL-EBI
WormBase CE08010 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 0.0
blast AAB70960 Hypothetical protein C08E3.7 [Caenorhabditis elegans] ref|NP_494012.1| C08E3.7 [Caenorhabditis elegans] 1.0E-173
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 7.0E-79
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 3.0E-76
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 9.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-36
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-36
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-9
Sequence
Target Sequence 
>C. ELEGANS:182579_AT
gtttgacgtctagaaccgttgcaacatataacacttcgttgtcaggactcgcacaactgg
tgggcatcttccctgctgaaaagttggaagtgatagatttcaaaggagaggggagtgtcg
gatttgaacagctgatcaattcggatcaatggaaaaaggctaaaaagtttgatggacttt
ggagtttgagtattccaattgagcacttcttgcatttcgagtttttcaaagtagatctag
cgatattcacagaagatgatgctgtaaaaatttgcgatatgatcgacacatccactcact
ttggtcgcgctcagatccgctgtaactctataaacatcagcgggatgaagagaatcttcg
gagcccatgatgaggaggacaacatcgtctaccaaaacctgaacaacatacctttctatg
tagaatttttgcctgatttgctccgagttacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGACGTCTAGAACCGTTGCAAC 266 447 530 Antisense
ATAACACTTCGTTGTCAGGACTCGC 704 23 557 Antisense
GACTCGCACAACTGGTGGGCATCTT 220 373 575 Antisense
GGCATCTTCCCTGCTGAAAAGTTGG 130 537 592 Antisense
GGGGAGTGTCGGATTTGAACAGCTG 252 499 639 Antisense
GCGATATGATCGACACATCCACTCA 191 289 803 Antisense
CTCAGATCCGCTGTAACTCTATAAA 105 229 839 Antisense
GAATCTTCGGAGCCCATGATGAGGA 77 329 881 Antisense
ACAACATCGTCTACCAAAACCTGAA 368 111 908 Antisense
AAACCTGAACAACATACCTTTCTAT 108 127 924 Antisense
TTGCCTGATTTGCTCCGAGTTACAA 541 701 958 Antisense
Sequence Source Affymetrix Proprietary Database