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[182578_at]

Description T13C5.6 /REP_DB=WormBase Gene ID /WP=CE04947 /TR=Q22461 /GB=AAK39292.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 41      6grp_total > 13      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 421
1 2 3 4 range
A 728.2
(1.7)
P 		694.2
(1.2)
P 		815
(3)
P 		409.3
(-3)
P 		406
B 761
(2.5)
P 		569.8
(-0.4)
P 		797.2
(3)
P 		394.2
(-3)
P 		403
C 650
(0.9)
P 		679.3
(1.4)
P 		768.1
(3)
P 		424.5
(-3)
P 		344
avr 713.1
(1.7) 		647.8
(0.7) 		793.4
(3) 		409.3
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 958.1
(3)
P 		809.9
(1.6)
P 		598.3
(-0.5)
P 		622.1
(-0.2)
P 		545.8
(-1)
P 		334.6
(-3)
P 		624
B 732.4
(2.4)
P 		773
(3)
P 		745
(2.6)
P 		621.8
(0.8)
P 		441.2
(-1.8)
P 		357.5
(-3)
P 		416
C 694.9
(1.4)
P 		800.2
(3)
P 		683.8
(1.2)
P 		709.2
(1.6)
P 		429.8
(-2.7)
P 		408
(-3)
P 		392
avr 795.1
(3) 		794.4
(3) 		675.7
(1.3) 		651
(1) 		472.3
(-1.5) 		366.7
(-3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 265.1
(3)
P 		150.7
(-0.3)
P 		213.1
(1.5)
P 		59.9
(-3)
P 		205
B 242.7
(3)
P 		140.7
(-0.9)
P 		184.7
(0.8)
P 		84
(-3)
P 		159
C 215.2
(1.4)
P 		195.3
(0.8)
P 		267.7
(3)
P 		71.6
(-3)
P 		196
avr 241
(3) 		162.2
(0.2) 		221.8
(2.3) 		71.8
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 176.6
(-0.2)
P 		288.1
(3)
P 		130.3
(-1.6)
P 		157.8
(-0.8)
P 		164.7
(-0.6)
P 		81.5
(-3)
P 		207
B 254.8
(2.9)
P 		257.3
(3)
P 		180.9
(-0.7)
P 		164.7
(-1.5)
P 		179.2
(-0.8)
P 		133.3
(-3)
P 		124
C 257.6
(3)
P 		244.2
(2.3)
P 		174
(-1.1)
P 		142.6
(-2.7)
P 		139.1
(-2.9)
P 		136.6
(-3)
P 		121
avr 229.7
(1.6) 		263.2
(3) 		161.7
(-1.2) 		155
(-1.4) 		161
(-1.2) 		117.1
(-3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16174
Sequence Type Exemplar sequence
Representative Public ID T13C5.6 NCBI
Target Description T13C5.6 /REP_DB=WormBase Gene ID /WP=CE04947 /TR=Q22461 /GB=AAK39292.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171700(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171700 NCBI Caenorhabditis elegans Beta Carbonic Anhydrase family member (bca-1) (bca-1) mRNA, complete cds. 10/11 A 
SNAP00000030097 ENSEMBL cdna:SNAP chromosome:CEL140:X:6205245:6206363:-1 10/11 None
GENEFINDER00000030102 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6205245:6206363:-1 10/11 None
T13C5.5b.2 ENSEMBL cdna:known chromosome:CEL140:X:6201866:6206363:-1 gene:T13C5.5 10/11 None
T13C5.5b.1 ENSEMBL cdna:known chromosome:CEL140:X:6201866:6206433:-1 gene:T13C5.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076639 1/11 Cross Hyb Matching Probes None
T13C5.6 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180890 2 1 NM_171700 182578_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6205244-6207577(-) 100.0 100.0
Public Domain and Genome References
Ensembl T13C5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15604 Beta carbonic anhydrase protein 1, isoform b [Caenorhabditis elegans] ref|NP_741808.1| Beta Carbonic Anhydrase family member (bca-1) [Caenorhabditis elegans] 0.0
blast AAK39291 Beta carbonic anhydrase protein 1, isoform a [Caenorhabditis elegans] ref|NP_741809.1| Beta Carbonic Anhydrase family member (bca-1) [Caenorhabditis elegans] 1.0E-155
blast CAE68890 Hypothetical protein CBG14861 [Caenorhabditis briggsae] 1.0E-112
blast T16869 hypothetical protein T13C5.6 - Caenorhabditis elegans 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR001765 EMBL-EBI Carbonic anhydrase, prokaryotic and plant 1.5E-20
Sequence
Target Sequence 
>C. ELEGANS:182578_AT
tttggaagctcgactcatgctcaccattccgtatggttttaacactatgaccccagtcga
agaaattattaaaaaagacattttccgggagacacctctcagatatttaggatatgccaa
cgaggttggagaagccttccgatcgcttgtaaaaccagtcgtcgtcaaattttcgtatgt
cgtcgccttcggatatgttgcagccgattcgatagataagggactgcaggaatatattaa
gacccattcgactagcaccgaaaagaccaaaaaggttgcgatagccgctgtggacaccgt
gttatggcagacatttgcatcagtcctgatcccaggattcactataaaccgcttttgttt
cttctccaacttgctcctacagaagtctacaaaactgccaacaaacatgagaaagtggac
agtgacgtgcttgggtcttgcaacaataccgtttattgtgcaccccatcgactcatttgt
agag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAAGCTCGACTCATGCTCACC 256 667 504 Antisense
AGACATTTTCCGGGAGACACCTCTC 18 71 579 Antisense
AGGTTGGAGAAGCCTTCCGATCGCT 527 55 626 Antisense
GATCGCTTGTAAAACCAGTCGTCGT 527 417 644 Antisense
CAAATTTTCGTATGTCGTCGCCTTC 109 189 669 Antisense
CGTCGCCTTCGGATATGTTGCAGCC 575 245 684 Antisense
ATTAAGACCCATTCGACTAGCACCG 288 11 739 Antisense
GGTTGCGATAGCCGCTGTGGACACC 551 507 777 Antisense
TTCTCCAACTTGCTCCTACAGAAGT 412 693 865 Antisense
GACAGTGACGTGCTTGGGTCTTGCA 359 369 921 Antisense
GCACCCCATCGACTCATTTGTAGAG 357 315 963 Antisense
Sequence Source Affymetrix Proprietary Database