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[182577_at]

Description AH6.3 /REP_DB=WormBase Gene ID /WP=CE01457 /TR=SW:Q09202 /GB=CAA88077.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 4.3
(-1.9)
A 		7.4
(1.6)
A 		3.3
(-3)
A 		8.6
(3)
A 		5
B 1.1
(-3)
A 		4.1
(3)
A 		3.8
(2.4)
A 		1.7
(-1.8)
A 		3
C 2
(-2.7)
A 		24.3
(3)
A 		1
(-3)
A 		2.4
(-2.6)
A 		23
avr 2.5
(-3) 		11.9
(3) 		2.7
(-2.9) 		4.2
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 3.8
(-2.7)
A 		1.7
(-2.9)
A 		0.9
(-3)
A 		2
(-2.9)
A 		3
(-2.8)
A 		66.8
(3)
A 		66
B 13
(-1.7)
A 		2.5
(-2.9)
A 		29.9
(0.2)
A 		1.4
(-3)
A 		8.7
(-2.2)
A 		55.4
(3)
A 		54
C 1.5
(-3)
A 		1.6
(-3)
A 		1.7
(-3)
A 		2.3
(-2.9)
A 		7.6
(-2.5)
A 		76.2
(3)
A 		75
avr 6.1
(-2.6) 		1.9
(-3) 		10.8
(-2.2) 		1.9
(-3) 		6.4
(-2.6) 		66.1
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(3)
A 		1.6
(3)
A 		0.9
(-3)
A 		1.3
(0.4)
A 		1
B 0.4
(-3)
A 		1
(3)
A 		0.9
(2)
A 		0.4
(-3)
A 		1
C 0.6
(-2.8)
A 		7
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		7
avr 0.9
(-2.5) 		3.2
(3) 		0.7
(-3) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		0.6
(-2.9)
A 		0.2
(-3)
A 		0.5
(-2.9)
A 		0.9
(-2.7)
A 		16.3
(3)
A 		16
B 4.5
(-1.8)
A 		0.8
(-2.9)
A 		7.3
(-1)
A 		0.4
(-3)
A 		3.5
(-2.1)
A 		20.6
(3)
A 		20
C 0.6
(-3)
A 		0.5
(-3)
A 		0.4
(-3)
A 		0.5
(-3)
A 		2.5
(-2.5)
A 		25.5
(3)
A 		25
avr 1.9
(-2.6) 		0.6
(-3) 		2.6
(-2.4) 		0.5
(-3) 		2.3
(-2.5) 		20.8
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3027
Sequence Type Exemplar sequence
Representative Public ID AH6.3 NCBI
Target Description AH6.3 /REP_DB=WormBase Gene ID /WP=CE01457 /TR=SW:Q09202 /GB=CAA88077.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063640(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063640 NCBI Caenorhabditis elegans AH6.3 (AH6.3) mRNA, complete cds. 11/11 None
SNAP00000033431 ENSEMBL cdna:SNAP chromosome:CEL140:II:9519058:9520074:1 11/11 None
GENEFINDER00000033442 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9519058:9520074:1 11/11 None
AH6.3 ENSEMBL cdna:known chromosome:CEL140:II:9519058:9520074:1 gene:AH6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9519054-9520071(+) 72.73 100.0
Public Domain and Genome References
Gene Title
Ensembl AH6.3
Entrez Gene 181808 Entrez gene
SwissProt Q09202 EMBL-EBI
WormBase CE01457 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88077 Hypothetical protein AH6.3 [Caenorhabditis elegans] ref|NP_496041.1| AH6.3 [Caenorhabditis elegans] sp|Q09202|YP23_CAEEL Hypothetical protein AH6.3 in chromosome II 3.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496041.1 1 4-21
AH6.3 1 4-21
SNAP00000033431 1 4-21
GENEFINDER00000033442 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:182577_AT
gaagccaaccgcttctactgaatcggtttcaccactcaacgaacctaaacctccaccgca
atctgctgtgcctcagaagcctgctgcacctgcggcagaagaaaaggctccagtggatcc
gaaggatccaaaaagtaaagatgtggatgaggcgaagaaaccagatccagcgaattcaaa
gaagtccaacaaatcgaagaaaccagagaagggctcgaagaagtctaaaaaatcggagaa
gtcaaagaagaagaagacggaggagaaggttatgagtgaggacaaacctgaaagaccgga
taaattgacggaggaggaaaagccggatgcaaaggaaaagaaagaaattgaaaaagagaa
aaccaaggaaaaggagaaaactaaggaaaaagagaagactcaggagaaggaaaaatcgaa
ggatgagacggttccaaagcagcatgcaccatctttgaaacgtcaagaaggagataagaa
cccagagataacgaatccaatcgtgactccggaaactgacgagttcccaacaattgacga
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCAACCGCTTCTACTGAATCG 554 343 96 Antisense
TACTGAATCGGTTTCACCACTCAAC 84 647 111 Antisense
TTCACCACTCAACGAACCTAAACCT 207 685 123 Antisense
CCTGCTGCACCTGCGGCAGAAGAAA 322 267 175 Antisense
AAGGCTCCAGTGGATCCGAAGGATC 358 161 199 Antisense
GAGGCGAAGAAACCAGATCCAGCGA 6 407 244 Antisense
GAGGACAAACCTGAAAGACCGGATA 274 403 373 Antisense
GACGGTTCCAAAGCAGCATGCACCA 318 377 522 Antisense
AACGAATCCAATCGTGACTCCGGAA 19 139 585 Antisense
GACTCCGGAAACTGACGAGTTCCCA 50 365 600 Antisense
GACGAGTTCCCAACAATTGACGAAG 359 379 613 Antisense
Sequence Source Affymetrix Proprietary Database