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[182576_at]

Description Y37H2A.3 /REP_DB=WormBase Gene ID /WP=CE24209 /TR=Q9U2N6 /GB=CAB60574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 43.2
(-3)
A 		84.6
(0.7)
A 		53.2
(-2.1)
A 		110.6
(3)
A 		67
B 30.3
(1.5)
A 		26.8
(0)
A 		19.7
(-3)
A 		33.9
(3)
A 		14
C 40.6
(-2.8)
A 		72.6
(0.2)
A 		38.2
(-3)
A 		102.4
(3)
A 		64
avr 38
(-2.9) 		61.3
(0.2) 		37
(-3) 		82.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 86
(3)
A 		39.4
(-0.7)
A 		50
(0.1)
A 		10.7
(-3)
A 		59.4
(0.9)
A 		36.3
(-1)
A 		75
B 54
(3)
A 		27.9
(-0.3)
A 		12.2
(-2.3)
A 		6.8
(-3)
A 		25.7
(-0.6)
A 		19
(-1.4)
A 		47
C 8
(-3)
A 		66.1
(3)
A 		12.7
(-2.5)
A 		55
(1.9)
A 		38.9
(0.2)
A 		51.7
(1.5)
A 		58
avr 49.3
(3) 		44.5
(1.9) 		25
(-2.8) 		24.2
(-3) 		41.3
(1.1) 		35.7
(-0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.7
(-0.6)
A 		18.4
(3)
A 		13.9
(-3)
A 		16.2
(0.1)
A 		5
B 9.7
(3)
A 		6.6
(-0.6)
A 		4.6
(-3)
A 		7.2
(0.1)
A 		5
C 13.4
(-2.9)
A 		20.9
(3)
A 		13.3
(-3)
A 		17.3
(0.2)
A 		8
avr 12.9
(-0.1) 		15.3
(3) 		10.6
(-3) 		13.6
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15.8
(2.2)
A 		14
(1.5)
A 		10.9
(0.2)
A 		2.7
(-3)
A 		17.9
(3)
A 		8.8
(-0.6)
A 		15
B 18.8
(3)
A 		9.3
(-0.4)
A 		3
(-2.6)
A 		1.8
(-3)
A 		10.4
(0)
A 		7.1
(-1.1)
A 		17
C 3
(-3)
A 		20.2
(3)
A 		3.2
(-2.9)
A 		11.1
(-0.2)
A 		12.6
(0.3)
A 		17.3
(2)
A 		17
avr 12.5
(1.7) 		14.5
(3) 		5.7
(-2.7) 		5.2
(-3) 		13.6
(2.4) 		11.1
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13817
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.3 NCBI
Target Description Y37H2A.3 /REP_DB=WormBase Gene ID /WP=CE24209 /TR=Q9U2N6 /GB=CAB60574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075134 NCBI Caenorhabditis elegans Y37H2A.3 (Y37H2A.3) mRNA, complete cds. 11/11 None
SNAP00000043007 ENSEMBL cdna:SNAP chromosome:CEL140:V:18122229:18124031:1 11/11 None
GENEFINDER00000043024 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18122229:18126168:1 11/11 None
Y37H2A.3 ENSEMBL cdna:known chromosome:CEL140:V:18122229:18124031:1 gene:Y37H2A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.3
Entrez Gene 189627 Entrez gene
SwissProt Q9U2N6 EMBL-EBI
WormBase CE24209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60574 Hypothetical protein Y37H2A.3 [Caenorhabditis elegans] ref|NP_507535.1| Y37H2A.3 [Caenorhabditis elegans] 0.0
blast AAC02594 Hypothetical protein F58H7.6 [Caenorhabditis elegans] ref|NP_500013.1| F58H7.6 [Caenorhabditis elegans] 1.0E-157
blast CAA20985 Hypothetical protein Y38H6C.5 [Caenorhabditis elegans] ref|NP_507948.1| Y38H6C.5 [Caenorhabditis elegans] 2.0E-75
blast CAA20985 Hypothetical protein Y38H6C.5 [Caenorhabditis elegans] ref|NP_507948.1| Y38H6C.5 [Caenorhabditis elegans] 4.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR005162 EMBL-EBI Retrotransposon gag protein 2.0E-24
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.6E-8
Sequence
Target Sequence 
>C. ELEGANS:182576_AT
ggaccttgtaggtcgcctggaaaggttccagcctggtttcgatgactcgtcgggaagcag
aatctgcagtttggcatggccaagaagtaagtgttttacttatgaggacgcagctcctca
acagaattcgattctgcgtttaaattcttatattaccactcatattcccattaaagctaa
taaggtaccgtattccgcactcgtagatactggttccagtattacagtagcacctgaaga
gatgatgaaaggtctacggattggaaagcttttgccgatgcagaactcgcaagcaattgg
cgtgggaggtcaaacagtcaacatagttggatcagcagtcgttcaatttgtaatcggagc
acacatggtcaaccatccagtttgttttatcgcagggcattgcatgccggaaatcgatgg
agaatatcgatttatcattggaaatgatatgttgtcgaagttgccgacgttccatttcaa
ctacaaagatgctcttttccacatcggagacgacacccttcctcttggacagaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCTTGTAGGTCGCCTGGAAAGG 79 521 1188 Antisense
GAAAGGTTCCAGCCTGGTTTCGATG 182 361 1207 Antisense
GGTTTCGATGACTCGTCGGGAAGCA 249 505 1222 Antisense
TATTACCACTCATATTCCCATTAAA 594 663 1338 Antisense
TAATAAGGTACCGTATTCCGCACTC 350 635 1365 Antisense
TCCGCACTCGTAGATACTGGTTCCA 676 591 1381 Antisense
AGCTTTTGCCGATGCAGAACTCGCA 346 79 1454 Antisense
AATCGGAGCACACATGGTCAACCAT 224 167 1539 Antisense
GGTCAACCATCCAGTTTGTTTTATC 477 503 1554 Antisense
GTCGAAGTTGCCGACGTTCCATTTC 538 473 1641 Antisense
ACACCCTTCCTCTTGGACAGAATTT 461 109 1700 Antisense
Sequence Source Affymetrix Proprietary Database