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[182575_at]

Description C36C5.5 /REP_DB=WormBase Gene ID /WP=CE08594 /TR=O16405 /GB=AAB65924.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 40      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 15.7
(-3)
A 		53
(-1.3)
A 		149.3
(3)
A 		64.2
(-0.8)
A 		134
B 34.6
(-2.2)
A 		51.9
(-1.6)
A 		175.1
(3)
M 		12.9
(-3)
A 		162
C 6.1
(-3)
A 		53.6
(-0.8)
A 		136.4
(3)
M 		104
(1.5)
A 		130
avr 18.8
(-3) 		52.8
(-1.5) 		153.6
(3) 		60.4
(-1.1) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 3.6
(-3)
A 		4.7
(-2.9)
A 		64
(3)
A 		20.2
(-1.4)
A 		56.3
(2.2)
A 		7.7
(-2.6)
A 		60
B 17.8
(-2)
A 		32.8
(0.1)
A 		35.9
(0.6)
A 		10.9
(-3)
A 		52.8
(3)
A 		31.8
(-0)
A 		42
C 32
(-2.7)
A 		45.7
(-1.1)
A 		29.1
(-3)
A 		81.5
(3)
A 		41.5
(-1.6)
A 		59.4
(0.5)
A 		52
avr 17.8
(-3) 		27.7
(-1.2) 		43
(1.7) 		37.5
(0.6) 		50.2
(3) 		33
(-0.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 5.7
(-3)
A 		11.5
(-2)
A 		39
(3)
A 		9.4
(-2.3)
A 		33
B 11
(-1.7)
A 		12.8
(-1.4)
A 		40.6
(3)
M 		2.7
(-3)
A 		38
C 2
(-3)
A 		15.4
(-1.2)
A 		47.5
(3)
M 		17.5
(-1)
A 		46
avr 6.2
(-3) 		13.2
(-1.8) 		42.4
(3) 		9.9
(-2.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.7
(-2.6)
A 		13.9
(1.9)
A 		5.1
(-1.4)
A 		17
(3)
A 		1.9
(-2.6)
A 		16
B 6.2
(-1.9)
A 		10.9
(-0.4)
A 		8.7
(-1.1)
A 		2.9
(-3)
A 		21.4
(3)
A 		11.8
(-0.1)
A 		19
C 11.9
(-0.8)
A 		14
(0.2)
A 		7.4
(-3)
A 		16.4
(1.3)
A 		13.4
(-0.1)
A 		19.9
(3)
A 		13
avr 6.3
(-3) 		8.9
(-1.6) 		10
(-1) 		8.1
(-2) 		17.3
(3) 		11.2
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15858
Sequence Type Exemplar sequence
Representative Public ID C36C5.5 NCBI
Target Description C36C5.5 /REP_DB=WormBase Gene ID /WP=CE08594 /TR=O16405 /GB=AAB65924.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071467 NCBI Caenorhabditis elegans C36C5.5 (C36C5.5) mRNA, complete cds. 11/11 None
SNAP00000036657 ENSEMBL cdna:SNAP chromosome:CEL140:V:3156922:3157635:1 11/11 None
GENEFINDER00000036676 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3156922:3157635:1 11/11 None
C36C5.5 ENSEMBL cdna:known chromosome:CEL140:V:3156922:3157635:1 gene:C36C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3156921-3157635(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C5.5
Entrez Gene 183261 Entrez gene
SwissProt O16405 EMBL-EBI
WormBase CE08594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503868 C36C5.5 [Caenorhabditis elegans] gb|AAB65924.1| Hypothetical protein C36C5.5 [Caenorhabditis elegans] 1.0E-108
blast NP_504867 F10G2.1 [Caenorhabditis elegans] gb|AAG24056.2| Hypothetical protein F10G2.1 [Caenorhabditis elegans] 1.0E-41
blast CAE57758 Hypothetical protein CBG00775 [Caenorhabditis briggsae] 6.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 5.4E-88
Sequence
Target Sequence 
>C. ELEGANS:182575_AT
tcctcttactagtcaccattggtatattgtccctggatttggttcaaggtgtaaaagtta
acctagtacctttgggaaacatggtcaattgtactctgtctgttgaattccattcgattg
gctgtatcatgcgtttaggcgagtttttcgatgatcttgataaacttgagctggacgata
aggcggaagtagtcaaattttcaaagtcctgcgaaactatccccacctgctttgaaactc
cgcagtgtacaccaaagggtatcgcaccagaggagaaaaaggaaatggtcaaaaaaatca
aaaactattgtagcggggtttcctatatcgccaacgactttgaagaatgccgtgataaac
ttgcggagaacaaatgttacaaagattgggacccgttccagagaaagttcaatctggaaa
aggatgagaagaaaaaagaacaaatgcgtgaagattcttgcaagaattattttggagaag
acaactgtatgaagacggtggttactgaaacatgtggtgaatccgattgggccaaacttc
gcgaccacttcgtgggaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTTACTAGTCACCATTGGTAT 158 593 23 Antisense
CATTGGTATATTGTCCCTGGATTTG 661 215 39 Antisense
GTACTCTGTCTGTTGAATTCCATTC 414 459 113 Antisense
ATTGGCTGTATCATGCGTTTAGGCG 406 3 139 Antisense
TCAAAGTCCTGCGAAACTATCCCCA 657 627 223 Antisense
CCCACCTGCTTTGAAACTCCGCAGT 386 257 244 Antisense
AACTCCGCAGTGTACACCAAAGGGT 80 143 258 Antisense
TAGCGGGGTTTCCTATATCGCCAAC 614 649 333 Antisense
TGGGACCCGTTCCAGAGAAAGTTCA 291 549 409 Antisense
TCCGATTGGGCCAAACTTCGCGACC 365 595 544 Antisense
ACTTCGCGACCACTTCGTGGGAATC 511 103 558 Antisense
Sequence Source Affymetrix Proprietary Database